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[185026_at]

Description B0238.12 /REP_DB=WormBase Gene ID /WP=CE07702 /TR=O16488 /GB=AAB65990.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_high_8_8 > 13      6grp_highest_nonorm > 60      6grp_total > 05      4grp_total > 03      6grp_highest_sub > De      6grp_high1_sub > De      6grp_rule_based > S1      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1499
1 2 3 4 range
A 302.9
(-2.5)
P 		344.4
(-2.3)
P 		171.6
(-3)
A 		1670.1
(3)
P 		1499
B 386.5
(-2.4)
P 		350
(-2.6)
P 		266
(-3)
P 		1533.6
(3)
P 		1268
C 504.8
(-1.7)
P 		378.4
(-2.3)
P 		223.5
(-3)
A 		1526
(3)
P 		1303
avr 398.1
(-2.2) 		357.6
(-2.4) 		220.4
(-3) 		1576.6
(3) 		1356

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 465
1 2 3 4 5 6 range
A 647.8
(3)
P 		507.9
(1.2)
P 		377.4
(-0.5)
P 		290.5
(-1.6)
P 		324.9
(-1.2)
P 		183
(-3)
P 		465
B 645.7
(3)
P 		417.2
(-0.5)
P 		367.9
(-1.3)
P 		436.4
(-0.3)
P 		331.6
(-1.9)
P 		259.4
(-3)
P 		386
C 563.3
(2.9)
P 		565.9
(3)
P 		456.3
(0.7)
P 		345.8
(-1.7)
P 		285.2
(-3)
P 		314.5
(-2.4)
P 		281
avr 618.9
(3) 		497
(1) 		400.5
(-0.6) 		357.6
(-1.3) 		313.9
(-2) 		252.3
(-3) 		367
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 282
1 2 3 4 range
A 110.3
(-1)
P 		74.8
(-2.1)
P 		44.9
(-3)
A 		244.5
(3)
P 		200
B 123.3
(-1.6)
P 		86.5
(-2.4)
P 		61.6
(-3)
P 		326.8
(3)
P 		265
C 167.1
(-0)
P 		108.8
(-2)
P 		77.9
(-3)
A 		257.3
(3)
P 		179
avr 133.6
(-1) 		90
(-2.2) 		61.5
(-3) 		276.2
(3) 		215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 119.4
(0.3)
P 		180.6
(3)
P 		82.2
(-1.3)
P 		73.7
(-1.7)
P 		98
(-0.6)
P 		44.5
(-3)
P 		136
B 224.7
(3)
P 		138.9
(-0.8)
P 		89.3
(-3)
P 		115.6
(-1.8)
P 		134.7
(-1)
P 		96.7
(-2.7)
P 		135
C 208.8
(3)
P 		172.7
(1.4)
P 		116.1
(-1)
P 		69.5
(-3)
P 		92.3
(-2)
P 		105.3
(-1.5)
P 		139
avr 184.3
(3) 		164.1
(1.8) 		95.9
(-2.2) 		86.3
(-2.8) 		108.3
(-1.5) 		82.2
(-3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185026_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11366
Sequence Type Exemplar sequence
Representative Public ID B0238.12 NCBI
Target Description B0238.12 /REP_DB=WormBase Gene ID /WP=CE07702 /TR=O16488 /GB=AAB65990.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072008(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072008 NCBI Caenorhabditis elegans B0238.12 (B0238.12) mRNA, complete cds. 11/11 None
SNAP00000038872 ENSEMBL cdna:SNAP chromosome:CEL140:V:5267609:5268537:1 9/11 None
B0238.12 ENSEMBL cdna:known chromosome:CEL140:V:5267634:5268626:1 gene:B0238.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038887 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5267787-5268537(+) 99.6 99.6
Public Domain and Genome References
Gene Title
Ensembl B0238.12
Entrez Gene 178914 Entrez gene
SwissProt O16488 EMBL-EBI
WormBase CE07702 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65990 Hypothetical protein B0238.12 [Caenorhabditis elegans] ref|NP_504409.1| B0238.12 [Caenorhabditis elegans] 1.0E-100
blast AAB65990 Hypothetical protein B0238.12 [Caenorhabditis elegans] ref|NP_504409.1| B0238.12 [Caenorhabditis elegans] 4.0E-90
blast CAE62644 Hypothetical protein CBG06778 [Caenorhabditis briggsae] 8.0E-58
blast CAE62644 Hypothetical protein CBG06778 [Caenorhabditis briggsae] 3.0E-53
blast CAE72086 Hypothetical protein CBG19174 [Caenorhabditis briggsae] 4.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 4.5E-25
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.1E-22
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 4.5E-25
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.1E-22
Sequence
Target Sequence 
>C. ELEGANS:185026_AT
ttttcatcgttctcgcagctttaattggatgctacgtctacgctcaagatgctcaaattc
tgccagtaggtggacaagttggtggtgggcaaagattgccatgccgtggacgaaatgaag
aatataagacttgtggaaccgcctgtgagccatcatgcaccaatccgaacccgatgtgca
ccaagcaatgcatcaacaacgtctgccaatgcagaagcggatacgttcgtaacgagatca
ccagacaatgtgtgcgtcaagctcaatgctccagacctggaactggtttcggaagctcca
ctccgttcccatctcaatctcctcagagatgcggacgtaacgaaacattcagaacctgcg
gatcttcgtgtgagccgagctgtactactccacgtccacaagcgtgcactatgcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCATCGTTCTCGCAGCTTTAAT 147 675 20 Antisense
GATGCTACGTCTACGCTCAAGATGC 650 411 47 Antisense
GCAAAGATTGCCATGCCGTGGACGA 147 319 108 Antisense
TAAGACTTGTGGAACCGCCTGTGAG 353 637 144 Antisense
GCACCAATCCGAACCCGATGTGCAC 297 313 176 Antisense
AATGTGTGCGTCAAGCTCAATGCTC 88 163 266 Antisense
GACCTGGAACTGGTTTCGGAAGCTC 293 383 293 Antisense
TTCCCATCTCAATCTCCTCAGAGAT 707 697 325 Antisense
TCAGAACCTGCGGATCTTCGTGTGA 9 625 368 Antisense
TCGTGTGAGCCGAGCTGTACTACTC 134 605 385 Antisense
CGTCCACAAGCGTGCACTATGCAGT 584 245 412 Antisense
Sequence Source Affymetrix Proprietary Database