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[185022_at]

Description B0238.11 /REP_DB=WormBase Gene ID /WP=CE07701 /TR=O16487 /GB=AAB65981.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 69      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 78      6grp_total > 79      4grp_total > 11      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 927
1 2 3 4 range
A 1566.7
(-1.2)
P 		1714.8
(0.3)
P 		1393.6
(-3)
P 		1986.3
(3)
P 		593
B 1704
(-2.3)
P 		1700.5
(-2.4)
P 		1634
(-3)
P 		2263.6
(3)
P 		630
C 1785.1
(-0.8)
P 		1610.4
(-2.1)
P 		1482.4
(-3)
P 		2321
(3)
P 		839
avr 1685.3
(-1.4) 		1675.2
(-1.5) 		1503.3
(-3) 		2190.3
(3) 		687

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 890
1 2 3 4 5 6 range
A 1522.1
(-0.7)
P 		1242.3
(-3)
P 		1253.6
(-2.9)
P 		1571.4
(-0.3)
P 		1666.2
(0.4)
P 		1985.3
(3)
P 		743
B 1474.5
(0.2)
P 		1661.6
(2.1)
P 		1157.2
(-3)
P 		1273
(-1.8)
P 		1599.4
(1.5)
P 		1745.1
(3)
P 		588
C 1281.7
(-1.9)
P 		1511.9
(-0.3)
P 		1114
(-3)
P 		1464.4
(-0.6)
P 		1370.9
(-1.3)
P 		2003.6
(3)
P 		890
avr 1426.1
(-1) 		1471.9
(-0.6) 		1174.9
(-3) 		1436.3
(-0.9) 		1545.5
(0) 		1911.3
(3) 		736
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 300
1 2 3 4 range
A 570.4
(3)
P 		372.2
(-1.3)
P 		364.3
(-1.4)
P 		290.8
(-3)
P 		280
B 543.4
(3)
P 		420
(-1.5)
P 		378.6
(-3)
P 		482.4
(0.8)
P 		165
C 590.9
(3)
P 		463
(-0.8)
P 		516.7
(0.8)
P 		391.4
(-3)
P 		200
avr 568.2
(3) 		418.4
(-2) 		419.9
(-1.9) 		388.2
(-3) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 398
1 2 3 4 5 6 range
A 280.6
(-2.8)
P 		441.8
(1.4)
P 		273
(-3)
P 		398.6
(0.3)
P 		502.8
(3)
P 		483.4
(2.5)
P 		230
B 513
(0.8)
P 		553.1
(1.4)
P 		281
(-3)
P 		337.2
(-2.1)
P 		649.8
(3)
P 		650.7
(3)
P 		370
C 475.1
(-0)
P 		461.3
(-0.2)
P 		283.5
(-3)
P 		294.5
(-2.8)
P 		443.6
(-0.5)
P 		670.7
(3)
P 		387
avr 422.9
(-0.3) 		485.4
(0.8) 		279.2
(-3) 		343.4
(-1.8) 		532.1
(1.7) 		601.6
(3) 		322
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185022_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11487
Sequence Type Exemplar sequence
Representative Public ID B0238.11 NCBI
Target Description B0238.11 /REP_DB=WormBase Gene ID /WP=CE07701 /TR=O16487 /GB=AAB65981.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072009(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072009 NCBI Caenorhabditis elegans B0238.11 (B0238.11) mRNA, complete cds. 11/11 None
SNAP00000038873 ENSEMBL cdna:SNAP chromosome:CEL140:V:5269302:5270396:1 11/11 None
GENEFINDER00000038887 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5268217:5270396:1 11/11 None
B0238.11.2 ENSEMBL cdna:known chromosome:CEL140:V:5269296:5270545:1 gene:B0238.11 11/11 None
B0238.11.1 ENSEMBL cdna:known chromosome:CEL140:V:5269297:5270545:1 gene:B0238.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5269301-5270396(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0238.11
Entrez Gene 178915 Entrez gene
SwissProt O16487 EMBL-EBI
WormBase CE07701 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65981 Hypothetical protein B0238.11 [Caenorhabditis elegans] ref|NP_504410.1| B0238.11 [Caenorhabditis elegans] 1.0E-162
blast CAE62643 Hypothetical protein CBG06777 [Caenorhabditis briggsae] 1.0E-63
blast CAE62643 Hypothetical protein CBG06777 [Caenorhabditis briggsae] 2.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 6.0E-12
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 2.8E-8
Sequence
Target Sequence 
>C. ELEGANS:185022_AT
tgacgcaggattgttcgttctcgacttccgtaagtatctgaaaagtgcggtgaaattcaa
aaatctgcaaatgaacgattcgtgtgccgccatatccacctatctgaacagtgaaaaatc
tctggtcgagtacaagtcaatgccggatcgtccacctacaaaaatacagctttacataaa
gaaacatcagattatgttgaaaggaatcggtggtgaaccgatgaaaaacgcctacaaagc
aatgaatgcggatacggagggtgcgaaagaactcgacgagctactccgagaagcttcgtt
gcagtacattccacaacttcaggagttccttgatacgcatccaaatctgacagaagaaca
gaagcgatcaatcgttaacaagatgaagatgctcaacaagaaatacaactcaaaggaaat
ttcaagcacaccaaagaagagatctagcaagaaggatccagagacggcattcagcctctt
ctgtagaacaaagaacgataagtatcgtgacctgtctgacgaggaacgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGCAGGATTGTTCGTTCTCGAC 552 569 357 Antisense
CGTTCTCGACTTCCGTAAGTATCTG 170 247 372 Antisense
AATGAACGATTCGTGTGCCGCCATA 496 165 426 Antisense
GCCATATCCACCTATCTGAACAGTG 419 281 445 Antisense
TACAAGTCAATGCCGGATCGTCCAC 84 643 487 Antisense
GACGAGCTACTCCGAGAAGCTTCGT 560 379 631 Antisense
GAAGCTTCGTTGCAGTACATTCCAC 487 341 646 Antisense
GAGTTCCTTGATACGCATCCAAATC 91 399 679 Antisense
AAGGATCCAGAGACGGCATTCAGCC 252 161 808 Antisense
GCATTCAGCCTCTTCTGTAGAACAA 26 309 823 Antisense
GTGACCTGTCTGACGAGGAACGCGA 498 483 863 Antisense
Sequence Source Affymetrix Proprietary Database