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[185021_at]

Description R11G11.7 /REP_DB=WormBase Gene ID /WP=CE12752 /TR=O16948 /GB=AAC69075.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 30      6grp_total > 35      4grp_total > 21      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 899
1 2 3 4 range
A 688.2
(2)
P 		359.8
(-0.8)
P 		89
(-3)
P 		811.7
(3)
P 		723
B 653.6
(2.1)
P 		344.4
(-0.9)
P 		121.9
(-3)
P 		751.1
(3)
P 		629
C 714.5
(1.1)
P 		297.6
(-1.8)
P 		123.5
(-3)
P 		987.5
(3)
P 		864
avr 685.4
(1.7) 		333.9
(-1.2) 		111.5
(-3) 		850.1
(3) 		739

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1166
1 2 3 4 5 6 range
A 1474.2
(3)
P 		678.8
(-1.3)
P 		1146.1
(1.2)
P 		488.8
(-2.3)
P 		355.4
(-3)
P 		981.9
(0.4)
P 		1119
B 1270.4
(3)
P 		676.9
(-0.7)
P 		1255.9
(2.9)
P 		498
(-1.8)
P 		307.8
(-3)
P 		790.5
(0)
P 		963
C 1414.2
(3)
P 		713.8
(-1)
P 		914
(0.2)
P 		530.2
(-2)
P 		356.9
(-3)
P 		771.1
(-0.6)
P 		1057
avr 1386.3
(3) 		689.8
(-1) 		1105.3
(1.4) 		505.7
(-2) 		340
(-3) 		847.8
(-0.1) 		1046
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 250.6
(3)
P 		78.1
(-1.6)
P 		23.3
(-3)
P 		118.8
(-0.5)
P 		227
B 208.4
(3)
P 		85
(-1.1)
P 		28.2
(-3)
P 		160.1
(1.4)
P 		180
C 236.5
(3)
P 		85.6
(-1.7)
P 		43.1
(-3)
P 		166.5
(0.8)
P 		193
avr 231.8
(3) 		82.9
(-1.5) 		31.5
(-3) 		148.5
(0.5) 		200

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 418
1 2 3 4 5 6 range
A 271.8
(3)
P 		241.4
(1.9)
P 		249.6
(2.2)
P 		124
(-2.4)
P 		107.2
(-3)
P 		239.1
(1.8)
P 		165
B 442
(3)
P 		225.3
(-1.1)
P 		305
(0.4)
P 		131.9
(-2.9)
P 		125
(-3)
P 		294.8
(0.2)
P 		317
C 524.2
(3)
P 		217.8
(-1.4)
P 		232.6
(-1.2)
P 		106.6
(-3)
P 		115.5
(-2.9)
P 		258.1
(-0.8)
P 		418
avr 412.7
(3) 		228.2
(-0.7) 		262.4
(-0) 		120.8
(-2.9) 		115.9
(-3) 		264
(-0) 		297
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185021_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15070
Sequence Type Exemplar sequence
Representative Public ID R11G11.7 NCBI
Target Description R11G11.7 /REP_DB=WormBase Gene ID /WP=CE12752 /TR=O16948 /GB=AAC69075.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070824(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070824 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-60) (pqn-60) mRNA, complete cds. 11/11 None
SNAP00000021482 ENSEMBL cdna:SNAP chromosome:CEL140:V:503868:504401:1 11/11 None
GENEFINDER00000021500 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:503868:504401:1 11/11 None
R11G11.7 ENSEMBL cdna:known chromosome:CEL140:V:503868:504401:1 gene:R11G11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:503867-504401(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-60
Ensembl R11G11.7
Entrez Gene 187826 Entrez gene
SwissProt O16948 EMBL-EBI
WormBase CE12752 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503225 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-60) [Caenorhabditis elegans] gb|AAC69075.1| Prion-like-(q/n-rich)-domain-bearing protein protein 60 [Caenorhabditis elegans] 1.0E-48
blast AAB69954 Prion-like-(q/n-rich)-domain-bearing protein protein 98 [Caenorhabditis elegans] ref|NP_503259.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-98) [Caenorhabditis elegans] 8.0E-21
blast AAB69957 Prion-like-(q/n-rich)-domain-bearing protein protein 97 [Caenorhabditis elegans] ref|NP_503262.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-97) [Caenorhabditis elegans] 3.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 1.9E-61
Sequence
Target Sequence 
>C. ELEGANS:185021_AT
aagtcttacctttcaattattgctctgttcgctgtagtttttgccgatttcgacggacca
atgttcttgagatatcagccgagaaatattcaacagtcttattttgcaattgctaagaac
tatcagctaagtcagatgcagaagaaccagcagcttcagcaatgggctcagatgaataat
ctttcgaacgaatactccagctacacacaacaacggagccaacaagagcaacaagtcagc
cagcagacttctcaaataatttcccagttatcaacagttcaaaaccagcttgaatccatt
ctgaacaacgataatcaaacgggagctcagaagcgacaggctatccagtctcttagatac
cagtaccctcaagaagtttcagttttgttccacattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCTTACCTTTCAATTATTGCTC 102 157 16 Antisense
ATTATTGCTCTGTTCGCTGTAGTTT 509 13 31 Antisense
GCTGTAGTTTTTGCCGATTTCGACG 332 295 46 Antisense
GATTTCGACGGACCAATGTTCTTGA 535 427 61 Antisense
CAGCAGCTTCAGCAATGGGCTCAGA 561 203 163 Antisense
CTTTCGAACGAATACTCCAGCTACA 97 223 196 Antisense
GTCAGCCAGCAGACTTCTCAAATAA 71 467 250 Antisense
AAACCAGCTTGAATCCATTCTGAAC 541 125 297 Antisense
AGAAGCGACAGGCTATCCAGTCTCT 586 71 344 Antisense
CAGTCTCTTAGATACCAGTACCCTC 331 207 361 Antisense
GAAGTTTCAGTTTTGTTCCACATTC 347 337 388 Antisense
Sequence Source Affymetrix Proprietary Database