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[185019_at]

Description C24H12.7 /REP_DB=WormBase Gene ID /WP=CE08361 /TR=O17159 /GB=AAB71203.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 08      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 13
(-3)
A 		14.7
(-2.7)
A 		28.7
(-0.3)
A 		48.5
(3)
A 		36
B 5.3
(-2.5)
A 		2.8
(-3)
A 		6.1
(-2.3)
A 		32.4
(3)
A 		30
C 0.9
(-3)
A 		4.8
(3)
A 		2.5
(-0.5)
A 		4.8
(3)
A 		4
avr 6.4
(-3) 		7.4
(-2.7) 		12.4
(-1.4) 		28.6
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2.3
(-2.8)
A 		1.7
(-3)
A 		19.6
(3)
A 		5.7
(-1.7)
A 		3.1
(-2.5)
A 		15.9
(1.8)
A 		18
B 24.8
(3)
A 		24.6
(2.9)
A 		2.8
(-2.6)
A 		1.4
(-3)
A 		24.5
(2.9)
A 		20.9
(2)
A 		23
C 1.1
(-3)
A 		28.1
(3)
A 		17.7
(0.7)
A 		5.7
(-2)
A 		3.3
(-2.5)
A 		18.2
(0.8)
A 		27
avr 9.4
(-0.8) 		18.1
(2.9) 		13.4
(0.9) 		4.3
(-3) 		10.3
(-0.4) 		18.3
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4.7
(-0.9)
A 		3.2
(-3)
A 		7.5
(3)
A 		7.1
(2.4)
A 		4
B 1.7
(-2)
A 		0.7
(-3)
A 		1.4
(-2.3)
A 		6.9
(3)
A 		6
C 0.3
(-3)
A 		1.4
(3)
A 		0.9
(0.3)
A 		0.8
(-0.3)
A 		1
avr 2.2
(-2.2) 		1.8
(-3) 		3.3
(-0.1) 		4.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.6
(-2.7)
A 		4.3
(3)
A 		1.5
(-1.3)
A 		0.9
(-2.2)
A 		3.9
(2.4)
A 		4
B 8.6
(2.1)
A 		8.2
(1.9)
A 		0.7
(-2.8)
A 		0.4
(-3)
A 		10
(3)
A 		7.8
(1.6)
A 		10
C 0.4
(-3)
A 		8.6
(3)
A 		4.5
(0)
A 		1.2
(-2.4)
A 		1.1
(-2.5)
A 		6.1
(1.2)
A 		8
avr 3.1
(-0.4) 		5.8
(2.9) 		3.2
(-0.3) 		1
(-3) 		4
(0.7) 		5.9
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185019_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5879
Sequence Type Exemplar sequence
Representative Public ID C24H12.7 NCBI
Target Description C24H12.7 /REP_DB=WormBase Gene ID /WP=CE08361 /TR=O17159 /GB=AAB71203.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061329(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061329 NCBI Caenorhabditis elegans C24H12.7 (C24H12.7) mRNA, complete cds. 11/11 None
C24H12.7 ENSEMBL cdna:known chromosome:CEL140:II:420055:421140:-1 gene:C24H12.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000023836 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:420054-421140(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24H12.7
Entrez Gene 182869 Entrez gene
SwissProt O17159 EMBL-EBI
WormBase CE08361 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71203 Hypothetical protein C24H12.7 [Caenorhabditis elegans] ref|NP_493730.1| C24H12.7 [Caenorhabditis elegans] 5.0E-75
blast AAB71207 Hypothetical protein C24H12.11 [Caenorhabditis elegans] ref|NP_493734.1| C24H12.11 [Caenorhabditis elegans] 9.0E-42
blast AAB71204 Hypothetical protein C24H12.8 [Caenorhabditis elegans] ref|NP_493731.1| C24H12.8 [Caenorhabditis elegans] 4.0E-36
Sequence
Target Sequence 
>C. ELEGANS:185019_AT
aacattgatcaccgttttttgccgctgaaacgtttccataattacttgtcactctttaaa
aaactattccgactaacacaattacctcttcttgcattcaaaaatgtaataattattccg
gatattaatgatttaatcaatatggctaggatttcgactaacttccgttgcaaattgaaa
aaagtgaatcgaaatatcttcaacctaattattgaatgccacgcagattttactgacaga
aaacttgttcccttttatcaaagaataattataatggaaacagagagagatatgcaattt
atatatcaatttatgatgaataaggcacgagtacaaggagtcgactgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATTGATCACCGTTTTTTGCCGC 416 137 22 Antisense
TTTTTTGCCGCTGAAACGTTTCCAT 427 571 36 Antisense
GTTTCCATAATTACTTGTCACTCTT 428 451 53 Antisense
ACTATTCCGACTAACACAATTACCT 44 101 84 Antisense
TAACACAATTACCTCTTCTTGCATT 580 639 95 Antisense
GGCTAGGATTTCGACTAACTTCCGT 399 491 165 Antisense
TCGACTAACTTCCGTTGCAAATTGA 646 599 175 Antisense
CAACCTAATTATTGAATGCCACGCA 190 187 222 Antisense
ATGCCACGCAGATTTTACTGACAGA 462 41 237 Antisense
TACTGACAGAAAACTTGTTCCCTTT 275 647 252 Antisense
GGCACGAGTACAAGGAGTCGACTGG 162 523 345 Antisense
Sequence Source Affymetrix Proprietary Database