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[185018_at] 7TM chemoreceptor, srx family

Description T24E12.8 /REP_DB=WormBase Gene ID /WP=CE17265 /TR=O44879 /GB=AAB95043.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 12      6grp_cgc > 45      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 29.8
(-3)
A 		60.2
(-0.4)
P 		32
(-2.8)
A 		100.6
(3)
A 		71
B 54.8
(-0.2)
A 		53.3
(-0.4)
A 		29.7
(-3)
A 		84.1
(3)
P 		54
C 65.8
(0)
A 		19.6
(-3)
A 		26.8
(-2.5)
A 		111.3
(3)
P 		92
avr 50.1
(-1.2) 		44.4
(-1.7) 		29.5
(-3) 		98.7
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 39.7
(0.5)
A 		12.3
(-3)
A 		47.9
(1.5)
A 		22.5
(-1.7)
A 		21.7
(-1.8)
A 		59.8
(3)
A 		48
B 30.6
(0.5)
A 		29.6
(0.3)
A 		34.3
(1)
A 		5
(-3)
A 		49.1
(3)
A 		18.3
(-1.2)
A 		44
C 42.3
(-0.2)
P 		78.6
(3)
P 		39.5
(-0.5)
A 		11.3
(-3)
A 		24
(-1.9)
A 		31.8
(-1.2)
A 		67
avr 37.5
(2.3) 		40.2
(2.9) 		40.6
(3) 		12.9
(-3) 		31.6
(1.1) 		36.6
(2.1) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10.8
(-0.7)
A 		13.1
(1.5)
P 		8.4
(-3)
A 		14.7
(3)
A 		6
B 17.5
(2.8)
A 		13.2
(0.4)
A 		6.9
(-3)
A 		17.9
(3)
P 		11
C 21.8
(3)
A 		5.6
(-3)
A 		9.4
(-1.6)
A 		18.8
(1.9)
P 		16
avr 16.7
(2.7) 		10.6
(-1.4) 		8.2
(-3) 		17.1
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 7.3
(-1.3)
A 		4.4
(-3)
A 		10.4
(0.5)
A 		5.7
(-2.2)
A 		6.6
(-1.7)
A 		14.6
(3)
A 		10
B 10.7
(0)
A 		9.9
(-0.2)
A 		8.3
(-0.7)
A 		1.3
(-3)
A 		19.9
(3)
A 		6.8
(-1.2)
A 		19
C 15.7
(0.7)
P 		24
(3)
P 		10.1
(-0.8)
A 		2.3
(-3)
A 		7.8
(-1.5)
A 		10.6
(-0.7)
A 		22
avr 11.2
(2) 		12.8
(3) 		9.6
(1) 		3.1
(-3) 		11.4
(2.1) 		10.7
(1.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185018_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5001
Sequence Type Exemplar sequence
Representative Public ID T24E12.8 NCBI
Target Description T24E12.8 /REP_DB=WormBase Gene ID /WP=CE17265 /TR=O44879 /GB=AAB95043.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062243(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062243 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-112) (srx-112) mRNA, complete cds. 11/11 None
SNAP00000005570 ENSEMBL cdna:SNAP chromosome:CEL140:II:3763441:3764230:-1 11/11 None
GENEFINDER00000005583 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3760295:3764580:-1 11/11 None
T24E12.8 ENSEMBL cdna:known chromosome:CEL140:II:3763441:3764580:-1 gene:T24E12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3763000-3764727(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-112
Ensembl T24E12.8
Entrez Gene 188865 Entrez gene
SwissProt O44879 EMBL-EBI
WormBase CE36571 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast D88109 protein T24E12.6 [imported] - Caenorhabditis elegans 1.0E-161
blast AAB95043 Serpentine receptor, class x protein 112 [Caenorhabditis elegans] ref|NP_494644.2| Serpentine Receptor, class X family member (srx-112) [Caenorhabditis elegans] 1.0E-159
blast AAB95043 Serpentine receptor, class x protein 112 [Caenorhabditis elegans] ref|NP_494644.2| Serpentine Receptor, class X family member (srx-112) [Caenorhabditis elegans] 1.0E-153
blast AAB95043 Serpentine receptor, class x protein 112 [Caenorhabditis elegans] ref|NP_494644.2| Serpentine Receptor, class X family member (srx-112) [Caenorhabditis elegans] 1.0E-109
blast AAF39807 Serpentine receptor, class x protein 105 [Caenorhabditis elegans] ref|NP_494619.2| Serpentine Receptor, class X family member (srx-105) [Caenorhabditis elegans] 1.0E-67
blast AAF39807 Serpentine receptor, class x protein 105 [Caenorhabditis elegans] ref|NP_494619.2| Serpentine Receptor, class X family member (srx-105) [Caenorhabditis elegans] 2.0E-67
blast AAB96691 Serpentine receptor, class x protein 110 [Caenorhabditis elegans] ref|NP_494624.1| Serpentine Receptor, class X family member (srx-110) [Caenorhabditis elegans] 1.0E-63
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494644.2 6 15-34,54-76,91-113,120-142,176-198,251-273
T24E12.8 6 15-34,54-76,91-113,120-142,176-198,251-273
SNAP00000005570 4 4-26,33-55,90-112,165-187
GENEFINDER00000005583 6 15-34,54-76,91-113,120-142,176-198,251-273
Sequence
Target Sequence 
>C. ELEGANS:185018_AT
gactgcaaatcaccattcgcattttttgagcacacgttttacaccaccgcttcctgtagt
acaactatgttttggataaaaaattatgtggtcttcagtttagcggcagtgacaaatttt
ttgaatctaatgatggctgtcaagttggtagtggtatcgagaactcaaaaatctatttcc
tccgtcgcttaccaaagaagacgcaagagatctatcaagtttttctttcaatcgtgtatt
caagattggatttcagcagttgacgctgcaaataatgcggcttccactaaatattgcgaa
aatcagtcttgtataatgctcatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGCAAATCACCATTCGCATTTT 208 371 547 Antisense
TTTGAGCACACGTTTTACACCACCG 105 667 571 Antisense
CCACCGCTTCCTGTAGTACAACTAT 603 273 590 Antisense
ATGTGGTCTTCAGTTTAGCGGCAGT 512 49 632 Antisense
CTCAAAAATCTATTTCCTCCGTCGC 267 227 710 Antisense
TCCTCCGTCGCTTACCAAAGAAGAC 344 593 724 Antisense
CAAGTTTTTCTTTCAATCGTGTATT 435 183 762 Antisense
GGATTTCAGCAGTTGACGCTGCAAA 231 509 794 Antisense
GACGCTGCAAATAATGCGGCTTCCA 472 379 808 Antisense
ATGCGGCTTCCACTAAATATTGCGA 58 41 821 Antisense
ATCAGTCTTGTATAATGCTCATCTC 600 29 848 Antisense
Sequence Source Affymetrix Proprietary Database