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[185017_at]

Description C49H3.12 /REP_DB=WormBase Gene ID /WP=CE04238 /TR=Q9GYQ5 /GB=AAF99898.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 32      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 36.4
(-3)
A 		148.8
(1.5)
P 		187.9
(3)
P 		141.9
(1.2)
A 		152
B 26.2
(-3)
A 		138.9
(0.6)
P 		214.8
(3)
P 		73.8
(-1.5)
A 		189
C 50.2
(-3)
A 		120.7
(-0.9)
P 		168.9
(0.5)
P 		256.3
(3)
P 		206
avr 37.6
(-3) 		136.1
(0.9) 		190.5
(3) 		157.3
(1.7) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 102.1
(-3)
A 		190.3
(-1.4)
P 		296.9
(0.5)
P 		438.6
(3)
P 		247.9
(-0.4)
P 		117.2
(-2.7)
M 		337
B 90.1
(-3)
A 		190.9
(-0.5)
P 		220.4
(0.3)
P 		327.8
(2.9)
P 		330.2
(3)
P 		107.3
(-2.6)
P 		240
C 85.9
(-3)
A 		192.7
(-0.7)
P 		239
(0.4)
P 		260
(0.8)
P 		360.1
(3)
P 		103
(-2.6)
P 		274
avr 92.7
(-3) 		191.3
(-0.6) 		252.1
(0.8) 		342.1
(3) 		312.7
(2.3) 		109.2
(-2.6) 		249
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 13.3
(-3)
A 		32.3
(0.2)
P 		49.1
(3)
P 		20.8
(-1.7)
A 		36
B 8.4
(-3)
A 		34.3
(0.8)
P 		49.8
(3)
P 		15.7
(-1.9)
A 		41
C 16.6
(-3)
A 		34.7
(-0.4)
P 		58.9
(3)
P 		43.2
(0.8)
P 		42
avr 12.8
(-3) 		33.8
(0.2) 		52.6
(3) 		26.6
(-0.9) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 18.8
(-3)
A 		67.7
(0.2)
P 		64.7
(-0)
P 		111.2
(3)
P 		74.8
(0.6)
P 		28.5
(-2.4)
M 		92
B 31.3
(-3)
A 		63.5
(-1.1)
P 		53.5
(-1.7)
P 		86.8
(0.2)
P 		134.2
(3)
P 		40
(-2.5)
P 		103
C 31.9
(-3)
A 		58.8
(-1.1)
P 		60.8
(-1)
P 		52.3
(-1.6)
P 		116.5
(3)
P 		34.5
(-2.8)
P 		85
avr 27.3
(-3) 		63.3
(-0.3) 		59.7
(-0.6) 		83.4
(1.1) 		108.5
(3) 		34.3
(-2.5) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185017_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8889
Sequence Type Exemplar sequence
Representative Public ID C49H3.12 NCBI
Target Description C49H3.12 /REP_DB=WormBase Gene ID /WP=CE04238 /TR=Q9GYQ5 /GB=AAF99898.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068922(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068922 NCBI Caenorhabditis elegans C49H3.12 (C49H3.12) mRNA, complete cds. 11/11 None
GENEFINDER00000028683 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7926807:7927264:-1 11/11 None
C49H3.12 ENSEMBL cdna:known chromosome:CEL140:IV:7926807:7927264:-1 gene:C49H3.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7926812-7927270(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49H3.12
Entrez Gene 183629 Entrez gene
SwissProt Q9GYQ5 EMBL-EBI
WormBase CE04238 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99898 Hypothetical protein C49H3.12 [Caenorhabditis elegans] ref|NP_501323.1| C49H3.12 [Caenorhabditis elegans] 2.0E-66
blast CAE70913 Hypothetical protein CBG17710 [Caenorhabditis briggsae] 2.0E-58
Sequence
Target Sequence 
>C. ELEGANS:185017_AT
gattatccctttggatggtctcacccgtaatgaacatttgcaatttcttcagcttcaaaa
tgctgcctataatatgtatatcagaacgtttgctgaaaggaagcaaaaactcaatgtatt
taaaagctggtatgcagcgacaactcaatttccaccgttaaaaaacgagtttttcgaaaa
tgacacagttgtcggtgaaagccagccgaattctgcaccagttagcatgagtcttgtgta
ttcaaagcctcggactgtagacgatgatatcggaatgcctctcaaccaaccaattttcac
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTATCCCTTTGGATGGTCTCACC 546 429 51 Antisense
GATGGTCTCACCCGTAATGAACATT 60 407 64 Antisense
TTCTTCAGCTTCAAAATGCTGCCTA 700 689 95 Antisense
AAAAGCTGGTATGCAGCGACAACTC 253 131 172 Antisense
GACACAGTTGTCGGTGAAAGCCAGC 113 367 232 Antisense
TGAAAGCCAGCCGAATTCTGCACCA 91 573 246 Antisense
TCTGCACCAGTTAGCATGAGTCTTG 468 607 262 Antisense
GAGTCTTGTGTATTCAAAGCCTCGG 440 399 279 Antisense
AAAGCCTCGGACTGTAGACGATGAT 687 123 294 Antisense
GATGATATCGGAATGCCTCTCAACC 68 411 313 Antisense
CCTCTCAACCAACCAATTTTCACAA 506 267 328 Antisense
Sequence Source Affymetrix Proprietary Database