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[185015_at]

Description C33E10.2 /REP_DB=WormBase Gene ID /WP=CE17491 /TR=O61800 /GB=AAC16977.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 61      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 43.7
(2.2)
A 		17.4
(-2.7)
A 		48.2
(3)
A 		15.9
(-3)
A 		32
B 45
(0.6)
A 		70
(3)
A 		37.3
(-0.2)
A 		8.2
(-3)
A 		62
C 27.5
(2.3)
A 		10.9
(-2.2)
A 		29.9
(3)
A 		7.8
(-3)
A 		22
avr 38.7
(3) 		32.8
(1.7) 		38.5
(3) 		10.6
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 71.6
(-1)
A 		37.1
(-3)
A 		50.7
(-2.2)
A 		93.2
(0.3)
A 		77.4
(-0.6)
P 		138.2
(3)
M 		101
B 50.9
(-3)
A 		88.4
(-0.5)
A 		55.4
(-2.7)
A 		65.8
(-2)
A 		90.4
(-0.3)
A 		140.3
(3)
P 		89
C 55.4
(-3)
A 		96.7
(-0.2)
P 		97.2
(-0.2)
A 		62.8
(-2.5)
A 		86.9
(-0.9)
A 		144.1
(3)
P 		89
avr 59.3
(-3) 		74.1
(-1.9) 		67.8
(-2.4) 		73.9
(-1.9) 		84.9
(-1.1) 		140.9
(3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 15.9
(3)
A 		3.8
(-2.3)
A 		12.6
(1.5)
A 		2.3
(-3)
A 		14
B 14.4
(1.9)
A 		17.3
(3)
A 		8.6
(-0.3)
A 		1.7
(-3)
A 		16
C 9.1
(2.1)
A 		3.1
(-1.8)
A 		10.4
(3)
A 		1.3
(-3)
A 		9
avr 13.1
(3) 		8.1
(0.3) 		10.5
(1.6) 		1.8
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 13.2
(-2.4)
A 		13.2
(-2.4)
A 		11
(-3)
A 		23.6
(0.3)
A 		23.4
(0.3)
P 		33.6
(3)
M 		23
B 17.7
(-2.4)
A 		29.4
(-0.5)
A 		13.5
(-3)
A 		17.4
(-2.4)
A 		36.7
(0.6)
A 		52.3
(3)
P 		39
C 20.5
(-1.7)
A 		29.5
(-0.2)
P 		24.7
(-1)
A 		12.6
(-3)
A 		28.1
(-0.4)
A 		48.3
(3)
P 		36
avr 17.1
(-2.9) 		24
(-1.4) 		16.4
(-3) 		17.9
(-2.7) 		29.4
(-0.2) 		44.7
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185015_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17507
Sequence Type Exemplar sequence
Representative Public ID C33E10.2 NCBI
Target Description C33E10.2 /REP_DB=WormBase Gene ID /WP=CE17491 /TR=O61800 /GB=AAC16977.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078406 NCBI Caenorhabditis elegans C33E10.2 (C33E10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000003546 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17301406:17303740:1 11/11 None
SNAP00000003542 ENSEMBL cdna:SNAP chromosome:CEL140:X:17302663:17303740:1 11/11 None
C33E10.2 ENSEMBL cdna:known chromosome:CEL140:X:17302663:17303740:1 gene:C33E10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17302662-17303740(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33E10.2
Entrez Gene 183161 Entrez gene
SwissProt O61800 EMBL-EBI
WormBase CE17491 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC16977 Hypothetical protein C33E10.2 [Caenorhabditis elegans] ref|NP_510807.1| C33E10.2 [Caenorhabditis elegans] 1.0E-173
blast CAB54326 Hypothetical protein Y113G7B.4 [Caenorhabditis elegans] ref|NP_507895.1| Y113G7B.4 [Caenorhabditis elegans] 1.0E-55
blast CAB54326 Hypothetical protein Y113G7B.4 [Caenorhabditis elegans] ref|NP_507895.1| Y113G7B.4 [Caenorhabditis elegans] 3.0E-54
blast CAB54328 Hypothetical protein Y113G7B.6 [Caenorhabditis elegans] ref|NP_507898.1| Y113G7B.6 [Caenorhabditis elegans] 5.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.5E-50
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.6E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.5E-50
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.6E-9
Sequence
Target Sequence 
>C. ELEGANS:185015_AT
aaagccccgcttgatgatgaagcttgacgatttaaccgtaattttgaagaatccacggca
acgattggatgatctcaacatttttggtggttcagattcggtcgcagttgcaacgtggtt
cagagatactttcaatccagaaaatatgcttcataccaaaaaggtttttttgggaaactt
ggaattcaatgatgttatcactatcatttcaactttgaaacccggattccttcaaaaaat
tgactatgccagtttgttgcaacatgaacgttcgcatgaagttttcgagcttgaacaatg
gaaacaggcgaaagaggttatcagtccaatgtcatcatttcgtagcttccccattgagaa
catgttccatctgtctcgtttttggcttggctttccaggattatcaatttctgatgcaat
taaaatcagagatattctcttgaaatccgctcacttcaaaaatggaataattgatttgaa
agatgagatgacaccagaagttgcgcgagtttttaatccaaacttctctgctcacaatat
caatggaattaagaacaaaatcgatcgctttcttgtcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCCCGCTTGATGATGAAGCTT 560 123 321 Antisense
TTTGGTGGTTCAGATTCGGTCGCAG 238 667 403 Antisense
GGTCGCAGTTGCAACGTGGTTCAGA 97 503 420 Antisense
AGAGGTTATCAGTCCAATGTCATCA 59 69 633 Antisense
CAATGTCATCATTTCGTAGCTTCCC 460 183 647 Antisense
GTAGCTTCCCCATTGAGAACATGTT 95 457 662 Antisense
GAGAACATGTTCCATCTGTCTCGTT 204 393 676 Antisense
TCGTTTTTGGCTTGGCTTTCCAGGA 34 601 696 Antisense
GATGACACCAGAAGTTGCGCGAGTT 468 411 807 Antisense
TTAATCCAAACTTCTCTGCTCACAA 565 683 833 Antisense
CAAAATCGATCGCTTTCTTGTCATA 206 191 876 Antisense
Sequence Source Affymetrix Proprietary Database