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[185014_s_at]

Description F37B4.10 /REP_DB=WormBase Gene ID /WP=CE17799 /TR=O45167 /GB=AAK18944.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 54      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 90      6grp_total > 40      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 201.5
(0.3)
P 		150.7
(-1.9)
P 		125.4
(-3)
P 		263.4
(3)
P 		138
B 201
(0.6)
P 		141.9
(-3)
P 		154.6
(-2.2)
P 		241
(3)
P 		99
C 178.6
(-2.2)
P 		160.1
(-3)
P 		160.9
(-3)
P 		298
(3)
P 		138
avr 193.7
(-0.7) 		150.9
(-2.8) 		147
(-3) 		267.5
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 133.6
(-3)
P 		174.7
(-0.4)
P 		227.4
(3)
P 		211
(2)
P 		151.1
(-1.9)
P 		205.5
(1.6)
P 		94
B 248.1
(2.1)
P 		232.4
(1.2)
P 		264.5
(3)
P 		181.3
(-1.8)
P 		161.7
(-2.9)
P 		160.3
(-3)
P 		104
C 182.6
(-1)
P 		225
(2.9)
P 		171.5
(-2)
P 		226.2
(3)
P 		160.5
(-3)
P 		214.1
(1.9)
P 		66
avr 188.1
(-0.1) 		210.7
(2) 		221.1
(3) 		206.2
(1.6) 		157.8
(-3) 		193.3
(0.4) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 73.4
(3)
P 		32.7
(-3)
P 		32.8
(-3)
P 		38.6
(-2.1)
P 		41
B 64.1
(3)
P 		35
(-3)
P 		35.8
(-2.8)
P 		51.4
(0.4)
P 		29
C 59.1
(3)
P 		46
(-3)
P 		56.1
(1.6)
P 		50.2
(-1.1)
P 		13
avr 65.5
(3) 		37.9
(-3) 		41.6
(-2.2) 		46.7
(-1.1) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 24.6
(-3)
P 		62.1
(3)
P 		49.5
(1)
P 		53.5
(1.6)
P 		45.6
(0.4)
P 		50
(1.1)
P 		38
B 86.3
(3)
P 		77.4
(1.6)
P 		64.2
(-0.5)
P 		48
(-3)
P 		65.7
(-0.2)
P 		59.8
(-1.2)
P 		38
C 67.7
(2.1)
P 		68.7
(2.4)
P 		43.7
(-3)
P 		45.5
(-2.6)
P 		51.9
(-1.2)
P 		71.7
(3)
P 		28
avr 59.5
(0.1) 		69.4
(3) 		52.5
(-2) 		49
(-3) 		54.4
(-1.4) 		60.5
(0.4) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185014_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15880
Sequence Type Exemplar sequence
Representative Public ID F37B4.10 NCBI
Target Description F37B4.10 /REP_DB=WormBase Gene ID /WP=CE17799 /TR=O45167 /GB=AAK18944.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071380(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071380 NCBI Caenorhabditis elegans F37B4.10 (F37B4.10) mRNA, complete cds. 11/11 None
SNAP00000026932 ENSEMBL cdna:SNAP chromosome:CEL140:V:2875634:2879323:-1 11/11 None
GENEFINDER00000026938 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2875634:2879728:-1 11/11 None
F37B4.10 ENSEMBL cdna:known chromosome:CEL140:V:2875634:2877462:-1 gene:F37B4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2875633-2877462(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37B4.10
Entrez Gene 178746 Entrez gene
SwissProt O45167 EMBL-EBI
WormBase CE17799 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18944 Hypothetical protein F37B4.10 [Caenorhabditis elegans] ref|NP_503781.1| F37B4.10 [Caenorhabditis elegans] 0.0
blast AAK18944 Hypothetical protein F37B4.10 [Caenorhabditis elegans] ref|NP_503781.1| F37B4.10 [Caenorhabditis elegans] 1.0E-152
blast AAK18945 Seven tm receptor protein 39 [Caenorhabditis elegans] ref|NP_503782.1| Seven TM Receptor family member (str-39) [Caenorhabditis elegans] 9.0E-98
blast AAK18945 Seven tm receptor protein 39 [Caenorhabditis elegans] ref|NP_503782.1| Seven TM Receptor family member (str-39) [Caenorhabditis elegans] 7.0E-90
blast CAE58078 Hypothetical protein CBG01159 [Caenorhabditis briggsae] 7.0E-55
blast CAE58078 Hypothetical protein CBG01159 [Caenorhabditis briggsae] 1.0E-54
blast NP_504899 Seven TM Receptor family member (str-41) [Caenorhabditis elegans] gb|AAK72297.2| Seven tm receptor protein 41 [Caenorhabditis elegans] 2.0E-52
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000026932 3 62-84,112-134,144-166
GENEFINDER00000026938 4 5-27,42-59,90-112,132-154
Sequence
Target Sequence 
>C. ELEGANS:185014_S_AT
gtgaacctgttctagaagtccgcgaagttgaggttccaactgtgaatgtagcaccagttc
ccgcacgacttccggacttttgtccaccggctcgagttccagagcatctccagcttaacg
gctttgaagatcagcaaagggatcacgaaagtttgcaaatcaaagcaaatattatgccgg
tgagcatgccaagtactgcagatgggccattaaatcgtttctcgcccgatctagttgaaa
acgatgcaggatcagattcatctttgcaaaatggcaacgatcaggctcaatttgatgctc
aggagtatcaaaatcagacagcagttactcccctaaagctaatcgaaatcatcgacgaat
ttctggatcgactaaaaccgatgaagcagcttggatttgttcgaccacataaacctgtat
actgtattgtgtgtttgaagtatcaaaaatctttccacacttgtaactggaaacatacac
ccggcgaggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAACCTGTTCTAGAAGTCCGCGA 482 481 380 Antisense
GAAGTCCGCGAAGTTGAGGTTCCAA 442 335 394 Antisense
CACCGGCTCGAGTTCCAGAGCATCT 338 201 464 Antisense
GCATCTCCAGCTTAACGGCTTTGAA 180 309 483 Antisense
GCCGGTGAGCATGCCAAGTACTGCA 350 283 555 Antisense
GATGGGCCATTAAATCGTTTCTCGC 356 407 580 Antisense
GTTTCTCGCCCGATCTAGTTGAAAA 130 449 596 Antisense
GATCAGGCTCAATTTGATGCTCAGG 203 421 658 Antisense
GCAGCTTGGATTTGTTCGACCACAT 492 313 765 Antisense
AAAAATCTTTCCACACTTGTAACTG 298 129 824 Antisense
TGGAAACATACACCCGGCGAGGATC 650 547 847 Antisense
Sequence Source Affymetrix Proprietary Database