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[185013_at]

Description T06C12.14 /REP_DB=WormBase Gene ID /WP=CE16364 /TR=O18039 /GB=CAB03300.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 07      4grp_high_8_8 > 33      6grp_total > 08      4grp_total > 46      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 310.5
(3)
P 		89.4
(-2.8)
P 		80.3
(-3)
P 		97.3
(-2.6)
P 		230
B 276.9
(3)
P 		112.2
(-1.2)
P 		103.7
(-1.4)
A 		41.5
(-3)
A 		235
C 286.1
(3)
P 		136
(-0.7)
P 		73.8
(-2.2)
P 		41
(-3)
A 		245
avr 291.2
(3) 		112.5
(-1.6) 		85.9
(-2.3) 		59.9
(-3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 241.1
(3)
P 		101.1
(-1.6)
P 		68
(-2.7)
P 		100.6
(-1.6)
P 		57.8
(-3)
M 		70.8
(-2.6)
P 		183
B 222.3
(3)
P 		118.6
(-0.4)
P 		178.1
(1.5)
P 		93.8
(-1.3)
P 		66.4
(-2.2)
P 		41.1
(-3)
P 		181
C 229.7
(3)
P 		80
(-2.3)
P 		108
(-1.3)
P 		132.6
(-0.4)
P 		72.6
(-2.6)
P 		60.3
(-3)
P 		169
avr 231
(3) 		99.9
(-1.5) 		118
(-0.9) 		109
(-1.2) 		65.6
(-2.7) 		57.4
(-3) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 113
(3)
P 		19.4
(-2.7)
P 		21
(-2.6)
P 		14.2
(-3)
P 		99
B 88.3
(3)
P 		27.7
(-1.6)
P 		24
(-1.9)
A 		8.8
(-3)
A 		80
C 94.7
(3)
P 		39.1
(-0.8)
P 		25.7
(-1.7)
P 		6.9
(-3)
A 		88
avr 98.7
(3) 		28.7
(-1.7) 		23.6
(-2.1) 		10
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 44.4
(3)
P 		36
(1.3)
P 		14.8
(-3)
P 		25.5
(-0.8)
P 		17.5
(-2.5)
M 		17.2
(-2.5)
P 		30
B 77.3
(3)
P 		39.5
(-0.7)
P 		43.2
(-0.3)
P 		24.8
(-2.1)
P 		27
(-1.9)
P 		15.3
(-3)
P 		62
C 85.1
(3)
P 		24.4
(-2.6)
P 		27.5
(-2.3)
P 		26.7
(-2.4)
P 		23.5
(-2.7)
P 		20.2
(-3)
P 		65
avr 68.9
(3) 		33.3
(-1.2) 		28.5
(-1.7) 		25.7
(-2.1) 		22.7
(-2.4) 		17.6
(-3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185013_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12785
Sequence Type Exemplar sequence
Representative Public ID T06C12.14 NCBI
Target Description T06C12.14 /REP_DB=WormBase Gene ID /WP=CE16364 /TR=O18039 /GB=CAB03300.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074575(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074575 NCBI Caenorhabditis elegans T06C12.14 (T06C12.14) mRNA, complete cds. 11/11 None
SNAP00000035472 ENSEMBL cdna:SNAP chromosome:CEL140:V:15902619:15903484:1 11/11 None
GENEFINDER00000035474 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15902619:15903484:1 11/11 None
T06C12.14 ENSEMBL cdna:known chromosome:CEL140:V:15902580:15903484:1 gene:T06C12.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15902618-15903484(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06C12.14
Entrez Gene 188173 Entrez gene
SwissProt O18039 EMBL-EBI
WormBase CE16364 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03300 Hypothetical protein T06C12.14 [Caenorhabditis elegans] ref|NP_506976.1| T06C12.14 [Caenorhabditis elegans] 1.0E-124
blast CAB04292 Hypothetical protein F35E8.9 [Caenorhabditis elegans] ref|NP_506984.1| F35E8.9 [Caenorhabditis elegans] 1.0E-110
blast CAB04297 Hypothetical protein F35E8.13 [Caenorhabditis elegans] emb|CAB04291.1| Hypothetical protein F35E8.10 [Caenorhabditis elegans] ref|NP_506988.1| F35E8.13 [Caenorhabditis elegans] ref|NP_506985.1| F35E8.10 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.5E-10
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.3E-12
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 6.1E-11
Sequence
Target Sequence 
>C. ELEGANS:185013_AT
tgcttgcagcaatgttatctccgattcatcctgcgcagttctgtaccctgctccagttcc
agcggacggttatccatccccaggaagagatcagcagagaccattggcttgttatacgac
tgctaccgctaccccagctgcagtggttcaagacatgaaaactgccgcccagagcacatg
tccaagagcctgcggattgtgctgtcagacttcttcttacagttgtcctaatgttgcatt
cccacgtctcaactgcgccaccattacccaatcacaatgcttttctctggtttggagacc
aatcatcgccacggactgcccatctgcctgcggattttgcaatgaaggaggatgcgttga
cgccgttccagactgcgctaatgacagaagcatctgcaacgccgttgggctccagacctt
tgtgaacacctactgccaaagaacatgctctagatgcgcatctgcaacaactactcgatc
ctcgacctgcacatccttcatttctgactcgagcactgcttgcagagcctggtctctcaa
tggattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTTGCAGCAATGTTATCTCCGAT 347 579 135 Antisense
CTACCCCAGCTGCAGTGGTTCAAGA 471 223 263 Antisense
GCACATGTCCAAGAGCCTGCGGATT 246 317 308 Antisense
AGTTGTCCTAATGTTGCATTCCCAC 56 65 355 Antisense
CAATCACAATGCTTTTCTCTGGTTT 399 181 403 Antisense
TTTGGAGACCAATCATCGCCACGGA 428 665 425 Antisense
CGCCGTTCCAGACTGCGCTAATGAC 490 257 495 Antisense
AAGCATCTGCAACGCCGTTGGGCTC 613 147 522 Antisense
GATGCGCATCTGCAACAACTACTCG 336 415 587 Antisense
TTCTGACTCGAGCACTGCTTGCAGA 208 693 636 Antisense
AGAGCCTGGTCTCTCAATGGATTCT 460 69 658 Antisense
Sequence Source Affymetrix Proprietary Database