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[185012_s_at] 7TM chemoreceptor, sri family /// 7TM chemoreceptor, sri family

Description F22E5.16 /REP_DB=WormBase Gene ID /WP=CE09568 /TR=O16718 /GB=AAB66179.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 20      6grp_cgc > 16      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 20.6
(1.7)
A 		23.9
(2.7)
A 		3.9
(-3)
A 		25.1
(3)
A 		21
B 43.7
(3)
P 		37.1
(-0.4)
A 		32.1
(-3)
A 		41.8
(2)
A 		12
C 19.4
(-3)
A 		26.2
(-1.5)
A 		31
(-0.4)
P 		46.6
(3)
M 		27
avr 27.9
(-0.8) 		29.1
(-0.4) 		22.3
(-3) 		37.8
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 44.1
(3)
A 		3.7
(-3)
A 		27.3
(0.5)
M 		34.1
(1.5)
A 		24.8
(0.1)
A 		41.3
(2.6)
A 		40
B 33.8
(2.4)
A 		37
(3)
A 		17.3
(-0.6)
A 		4.2
(-3)
A 		8.4
(-2.2)
A 		31.6
(2)
A 		33
C 31.6
(-0.4)
P 		62.9
(3)
A 		29.8
(-0.6)
A 		8.3
(-3)
A 		16.2
(-2.1)
A 		36.3
(0.1)
A 		55
avr 36.5
(3) 		34.5
(2.4) 		24.8
(-0.3) 		15.5
(-3) 		16.5
(-2.7) 		36.4
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 7.5
(3)
A 		5.2
(0.9)
A 		1
(-3)
A 		3.7
(-0.5)
A 		7
B 13.9
(3)
P 		9.2
(-1.3)
A 		7.4
(-3)
A 		8.9
(-1.6)
A 		7
C 6.4
(-3)
A 		7.5
(-1.5)
A 		10.8
(3)
P 		7.9
(-1)
M 		4
avr 9.3
(3) 		7.3
(-1.1) 		6.4
(-3) 		6.8
(-2.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 8.1
(1.7)
A 		1.3
(-3)
A 		5.9
(0.2)
M 		8.6
(2)
A 		7.5
(1.3)
A 		10
(3)
A 		9
B 11.7
(2.7)
A 		12.3
(3)
A 		4.2
(-1.3)
A 		1.1
(-3)
A 		3.4
(-1.8)
A 		11.8
(2.7)
A 		11
C 11.7
(0.4)
P 		19.2
(3)
A 		7.6
(-1)
A 		1.7
(-3)
A 		5.2
(-1.8)
A 		12.2
(0.6)
A 		18
avr 10.5
(2.4) 		10.9
(2.7) 		5.9
(-1.3) 		3.8
(-3) 		5.4
(-1.7) 		11.3
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185012_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5003
Sequence Type Exemplar sequence
Representative Public ID F22E5.16 NCBI
Target Description F22E5.16 /REP_DB=WormBase Gene ID /WP=CE09568 /TR=O16718 /GB=AAB66179.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061927(11), NM_062066(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061927 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-57) (sri-57) mRNA, complete cds. 11/11 None
NM_062066 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-78) (sri-78) mRNA, complete cds. 11/11 A 
GENEFINDER00000006777 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3183796:3188451:1 11/11 None
GENEFINDER00000023628 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2668590:2673587:-1 11/11 None
F22E5.16 ENSEMBL cdna:known chromosome:CEL140:II:2670553:2672120:-1 gene:F22E5.16 11/11 None
Y27F2A.2 ENSEMBL cdna:known chromosome:CEL140:II:3185153:3186785:1 gene:Y27F2A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006770 7/11 Cross Hyb Matching Probes None
SNAP00000023617 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3183794-3186784(+) 90.88 90.88
chrII:2670551-2673586(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
7TM chemoreceptor, sri family
Gene Symbol sri-57
sri-78
Ensembl F22E5.16
Y27F2A.2
Entrez Gene 184844 Entrez gene
189558 Entrez gene
SwissProt O16718 EMBL-EBI
Q9N547 EMBL-EBI
WormBase CE33622 Wormbase
CE33727 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494328 Serpentine Receptor, class I family member (sri-57) [Caenorhabditis elegans] gb|AAO91734.1| Serpentine receptor, class i protein 57 [Caenorhabditis elegans] 0.0
blast NP_494467 Serpentine Receptor, class I family member (sri-78) [Caenorhabditis elegans] gb|AAO91686.1| Serpentine receptor, class i protein 78 [Caenorhabditis elegans] 0.0
blast T32076 hypothetical protein F22E5.15 - Caenorhabditis elegans 1.0E-148
blast CAE72393 Hypothetical protein CBG19550 [Caenorhabditis briggsae] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.1E-29
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.0E-43
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.3E-5
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.2E-67
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.0E-67
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.8E-43
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.8E-42
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494328.2 7 10-32,45-67,87-109,122-144,194-216,237-259,269-291
NP_494467.2 7 10-32,45-67,87-109,122-144,194-216,237-259,269-291
F22E5.16 7 10-32,45-67,87-109,122-144,194-216,237-259,269-291
Y27F2A.2 7 10-32,45-67,87-109,122-144,194-216,237-259,269-291
GENEFINDER00000006777 11 153-172,185-207,254-276,297-316,331-353,380-397,401-420,427-449,464-486,507-529,576-598
GENEFINDER00000023628 9 235-257,270-292,342-364,385-407,489-511,531-553,599-621,648-670,680-702
Sequence
Target Sequence 
>C. ELEGANS:185012_S_AT
tttctggcagtctacacgttttcagtagttggaatgtatttttgctcgggtattacagag
aatgagaagatgaaatttgttgaggagaaccttcccgagtacctctcatcttttcaatcc
ctcccgaacttctccatctaccaagccaacgcccttctctttatcatggtgattactgct
gtcattggcggcctactagccttctccttcttcatggcagttttgtataacatttttcga
atgttaagtttcatgaaagttcaaatgtctgacaccacttataagagacaccgagccgcc
gtatggagcctgattgcacaatttgccacgtcgataatttgctttttaccaccaatttct
ctggttttcgtagtgtttttgaagctacctaatcctcaggtaatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTGGCAGTCTACACGTTTTCAG 388 671 868 Antisense
TACACGTTTTCAGTAGTTGGAATGT 64 643 880 Antisense
GGAATGTATTTTTGCTCGGGTATTA 586 531 898 Antisense
GCCCTTCTCTTTATCATGGTGATTA 417 285 1018 Antisense
TGAAAGTTCAAATGTCTGACACCAC 168 573 1121 Antisense
AATGTCTGACACCACTTATAAGAGA 575 163 1131 Antisense
GATAATTTGCTTTTTACCACCAATT 3 423 1200 Antisense
GCTTTTTACCACCAATTTCTCTGGT 611 303 1208 Antisense
TCTCTGGTTTTCGTAGTGTTTTTGA 170 611 1225 Antisense
GTGTTTTTGAAGCTACCTAATCCTC 377 485 1240 Antisense
AGCTACCTAATCCTCAGGTAATCGT 460 79 1250 Antisense
Sequence Source Affymetrix Proprietary Database