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[185011_at]

Description Y40C7B.1 /REP_DB=WormBase Gene ID /WP=CE24260 /TR=Q9N506 /GB=AAF60541.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 17.3
(3)
A 		7.1
(-1.4)
A 		3.4
(-3)
A 		13.8
(1.5)
A 		14
B 3.2
(-3)
A 		42.4
(3)
A 		3.1
(-3)
A 		4.1
(-2.8)
A 		39
C 1.3
(-3)
A 		1.9
(-2.9)
A 		0.9
(-3)
A 		48.9
(3)
P 		48
avr 7.3
(-1.5) 		17.1
(1.4) 		2.5
(-3) 		22.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3.1
(-2.5)
A 		3.6
(-2.3)
A 		1.8
(-2.9)
A 		22.3
(3)
A 		1.7
(-2.9)
A 		1.3
(-3)
A 		21
B 0.8
(-2.9)
A 		9.8
(3)
A 		7.3
(1.4)
A 		1.9
(-2.2)
A 		1
(-2.7)
A 		0.6
(-3)
A 		9
C 2.5
(3)
A 		1.7
(0.5)
A 		0.6
(-3)
A 		2.3
(2.4)
A 		1
(-1.7)
A 		0.6
(-3)
A 		2
avr 2.1
(-2) 		5
(0.2) 		3.2
(-1.2) 		8.8
(3) 		1.2
(-2.7) 		0.8
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.3
(3)
A 		1.5
(-2.3)
A 		0.9
(-3)
A 		2
(-1.8)
A 		5
B 1
(-2.8)
A 		10.5
(3)
A 		0.7
(-3)
A 		0.9
(-2.9)
A 		10
C 0.4
(-2.9)
A 		0.6
(-2.8)
A 		0.3
(-3)
A 		8.2
(3)
P 		8
avr 2.6
(0.3) 		4.2
(3) 		0.6
(-3) 		3.7
(2.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.6
(-2.7)
A 		1.3
(-1.9)
A 		0.4
(-2.9)
A 		5.7
(3)
A 		0.5
(-2.8)
A 		0.3
(-3)
A 		5
B 0.3
(-2.8)
A 		3.2
(3)
A 		1.8
(0.2)
A 		0.5
(-2.4)
A 		0.4
(-2.6)
A 		0.2
(-3)
A 		3
C 0.9
(3)
A 		0.5
(0)
A 		0.1
(-3)
A 		0.5
(0)
A 		0.3
(-1.5)
A 		0.2
(-2.3)
A 		1
avr 0.6
(-1.8) 		1.7
(1.5) 		0.8
(-1.2) 		2.2
(3) 		0.4
(-2.4) 		0.2
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185011_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17841
Sequence Type Exemplar sequence
Representative Public ID Y40C7B.1 NCBI
Target Description Y40C7B.1 /REP_DB=WormBase Gene ID /WP=CE24260 /TR=Q9N506 /GB=AAF60541.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078400(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078400 NCBI Caenorhabditis elegans Y40C7B.1 (Y40C7B.1) mRNA, complete cds. 11/11 None
Y40C7B.1 ENSEMBL cdna:known chromosome:CEL140:X:17259800:17263507:1 gene:Y40C7B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17259799-17263507(+) 91.05 100.0
chrI:13102722-13106433(-) 91.81 97.11
Public Domain and Genome References
Gene Title
Ensembl Y40C7B.1
Entrez Gene 189793 Entrez gene
WormBase CE38888 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_510801 Y40C7B.1 [Caenorhabditis elegans] 0.0
blast AAF60541 Hypothetical protein Y40C7B.1 [Caenorhabditis elegans] 0.0
blast CAE17957 Hypothetical protein Y26D4A.14 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Methicillin resistance protein FemA probable tRNA-binding arm All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm 2.70000004768372
Sequence
Target Sequence 
>C. ELEGANS:185011_AT
atatattttctacaacactctttcaaccatgttatcaagctcttataaatggttttgaga
atggtttaagtaagagagacattagacactgctttcagacacaaaattttatggttgata
agaaagataaatcaaatatattagtcactacatcagaaaattgtgaagacattcctgatc
caagttcaatagatcccaataaaaagactttaataatttttgatgatttgatgttagaaa
aacaaaataagatagaacaatattacactagagggagacataataatattgattgttttt
atatttctcaaaactatataaaacttcctaaaaatactataagagagaatgctaatttct
ttatagtcttcactcaagataaattaaatctggattatatttatagagatcattgtggag
aaatagataagtcaaaatttaatgaaatggttacatctatttggaaagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATATTTTCTACAACACTCTTTCA 10 21 2258 Antisense
TTTCTACAACACTCTTTCAACCATG 26 673 2264 Antisense
TTCAACCATGTTATCAAGCTCTTAT 137 685 2279 Antisense
GAGAGACATTAGACACTGCTTTCAG 415 395 2331 Antisense
GACACTGCTTTCAGACACAAAATTT 326 367 2342 Antisense
TATTAGTCACTACATCAGAAAATTG 460 641 2396 Antisense
GAAGACATTCCTGATCCAAGTTCAA 81 341 2422 Antisense
TCCAAGTTCAATAGATCCCAATAAA 425 585 2436 Antisense
GAACAATATTACACTAGAGGGAGAC 488 353 2512 Antisense
GCTAATTTCTTTATAGTCTTCACTC 179 303 2608 Antisense
AATGGTTACATCTATTTGGAAAGTT 405 161 2703 Antisense
Sequence Source Affymetrix Proprietary Database