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[185010_at]

Description T08E11.5 /REP_DB=WormBase Gene ID /WP=CE19572 /TR=O76639 /GB=AAC26318.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 22      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 40.8
(3)
A 		15.2
(-1.5)
A 		15.9
(-1.4)
A 		6.6
(-3)
A 		34
B 14.8
(3)
A 		10.2
(0.8)
A 		2.5
(-3)
A 		10.5
(0.9)
A 		12
C 49.2
(0.2)
A 		28.8
(-1.3)
A 		5.8
(-3)
A 		87.4
(3)
A 		82
avr 34.9
(3) 		18.1
(-0.8) 		8.1
(-3) 		34.8
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 48.9
(3)
A 		6.2
(-3)
A 		38.3
(1.5)
A 		19.1
(-1.2)
A 		7.1
(-2.9)
A 		31
(0.5)
A 		43
B 11.5
(-1.1)
A 		8.7
(-1.7)
A 		2
(-3)
A 		23.8
(1.3)
A 		32.5
(3)
A 		12.4
(-1)
A 		31
C 6
(-2.5)
A 		9
(-2)
A 		2.7
(-3)
A 		5.6
(-2.5)
A 		29.3
(1.1)
A 		41.2
(3)
A 		39
avr 22.1
(1.2) 		8
(-3) 		14.3
(-1.1) 		16.2
(-0.6) 		23
(1.5) 		28.2
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 14.9
(3)
A 		3.3
(-2)
A 		4.2
(-1.6)
A 		1
(-3)
A 		14
B 4.7
(3)
A 		2.5
(-0.2)
A 		0.6
(-3)
A 		2.2
(-0.7)
A 		4
C 16.3
(3)
A 		8.3
(-0.4)
A 		2
(-3)
A 		14.7
(2.3)
A 		14
avr 12
(3) 		4.7
(-1.5) 		2.3
(-3) 		6
(-0.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 9
(3)
A 		2.2
(-2.9)
A 		8.3
(2.4)
A 		4.8
(-0.7)
A 		2.1
(-3)
A 		7.5
(1.7)
A 		7
B 4
(-1.3)
A 		2.9
(-1.9)
A 		0.5
(-3)
A 		6.3
(-0.3)
A 		13.2
(3)
A 		4.6
(-1.1)
A 		13
C 2.2
(-2.3)
A 		2.7
(-2.1)
A 		0.7
(-3)
A 		1.1
(-2.8)
A 		9.5
(1)
A 		13.8
(3)
A 		13
avr 5.1
(-0.5) 		2.6
(-3) 		3.2
(-2.4) 		4.1
(-1.5) 		8.3
(2.7) 		8.6
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185010_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4975
Sequence Type Exemplar sequence
Representative Public ID T08E11.5 NCBI
Target Description T08E11.5 /REP_DB=WormBase Gene ID /WP=CE19572 /TR=O76639 /GB=AAC26318.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061684(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061684 NCBI Caenorhabditis elegans T08E11.5 (T08E11.5) mRNA, complete cds. 11/11 None
T08E11.5 ENSEMBL cdna:known chromosome:CEL140:II:1821500:1823004:1 gene:T08E11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018368 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1821470-1823003(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08E11.5
Entrez Gene 173551 Entrez gene
SwissProt O76639 EMBL-EBI
WormBase CE33448 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26318 Hypothetical protein T08E11.5 [Caenorhabditis elegans] ref|NP_494085.2| T08E11.5 [Caenorhabditis elegans] 0.0
blast AAB70355 Hypothetical protein F42G2.3 [Caenorhabditis elegans] ref|NP_494272.1| F42G2.3 [Caenorhabditis elegans] 1.0E-60
blast AAC68940 Hypothetical protein C44C8.3 [Caenorhabditis elegans] gb|AAC68941.1| Hypothetical protein C44C8.2 [Caenorhabditis elegans] ref|NP_500008.1| C44C8.3 [Caenorhabditis elegans] ref|NP_500009.1| C44C8.2 [Caenorhabditis elegans] 5.0E-43
Sequence
Target Sequence 
>C. ELEGANS:185010_AT
aagaagctcaggcatactccgaatccctcaaagcctgaaaattcaaacaaaacatgttca
actagaaggtccgcacattgagcaactattgaaagttttaccttttttactcgataccgg
aggcacacccctatcgtctttcacattttcggagacattggtgacaactgaaaaacttga
ttttgacattgttcggaccgctgggattttgattttccagtggtcaacattgattaattt
atttgatttgcggcacaggagggtttatttcaagcgggttggactggagttcatcttaca
agttatccggaattttttggagcatggaagggattttgacactcattattcatttgaagg
gataaatgagcaagcgatttttaaggcacttgagttgcagacccgtgtttataaagaaat
aaggcataactgtgtcactttttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAAGCTCAGGCATACTCCGAATC 637 151 600 Antisense
TCCGAATCCCTCAAAGCCTGAAAAT 375 595 617 Antisense
GAAGGTCCGCACATTGAGCAACTAT 479 335 664 Antisense
TTTACTCGATACCGGAGGCACACCC 351 671 705 Antisense
CCTATCGTCTTTCACATTTTCGGAG 413 267 729 Antisense
GATTTTGACATTGTTCGGACCGCTG 582 427 778 Antisense
GGACCGCTGGGATTTTGATTTTCCA 398 523 794 Antisense
GATTTGCGGCACAGGAGGGTTTATT 478 417 844 Antisense
AGCGGGTTGGACTGGAGTTCATCTT 52 77 872 Antisense
GCACTTGAGTTGCAGACCCGTGTTT 424 307 985 Antisense
AAGGCATAACTGTGTCACTTTTTAC 490 161 1020 Antisense
Sequence Source Affymetrix Proprietary Database