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[185008_at]

Description F35F10.9 /REP_DB=WormBase Gene ID /WP=CE09934 /TR=Q9GYT8 /GB=AAF99938.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 27      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 19
(-2.6)
A 		47.2
(0)
A 		14.7
(-3)
A 		79.4
(3)
M 		65
B 17
(-1.3)
A 		31.4
(3)
A 		11.1
(-3)
A 		14.8
(-1.9)
A 		20
C 12.8
(-1)
A 		21.4
(3)
A 		8.4
(-3)
A 		13.4
(-0.7)
A 		13
avr 16.3
(-1.8) 		33.3
(2.4) 		11.4
(-3) 		35.9
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 41.7
(3)
P 		29
(0.5)
A 		18.5
(-1.5)
A 		10.7
(-3)
A 		30.1
(0.8)
A 		36.1
(1.9)
A 		31
B 2.8
(-2.8)
A 		2.1
(-3)
A 		25.4
(3)
A 		19.3
(1.4)
A 		3.1
(-2.7)
A 		9.7
(-1)
A 		23
C 17.5
(-2.5)
A 		22.4
(-1)
A 		35.6
(3)
A 		30.8
(1.6)
A 		25.5
(-0)
A 		15.7
(-3)
A 		20
avr 20.7
(-1) 		17.8
(-3) 		26.5
(3) 		20.3
(-1.3) 		19.6
(-1.8) 		20.5
(-1.1) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.9
(-0.6)
A 		10.2
(1.9)
A 		3.8
(-3)
A 		11.6
(3)
M 		8
B 5.4
(0.2)
A 		7.8
(3)
A 		2.6
(-3)
A 		3.2
(-2.3)
A 		5
C 4.2
(-0.1)
A 		6.2
(3)
A 		2.9
(-2.1)
A 		2.3
(-3)
A 		4
avr 5.5
(-0.1) 		8.1
(3) 		3.1
(-3) 		5.7
(0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7.7
(0.9)
P 		10.3
(3)
A 		4
(-2)
A 		2.7
(-3)
A 		9.1
(2.1)
A 		8.8
(1.8)
A 		8
B 1
(-2.7)
A 		0.7
(-3)
A 		6.2
(3)
A 		5.1
(1.8)
A 		1.3
(-2.3)
A 		3.6
(0.2)
A 		6
C 6.5
(-1.1)
A 		6.8
(-0.6)
A 		9.1
(3)
A 		6.2
(-1.6)
A 		8.2
(1.6)
A 		5.3
(-3)
A 		4
avr 5.1
(-1.6) 		5.9
(1.2) 		6.4
(3) 		4.7
(-3) 		6.2
(2.3) 		5.9
(1.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185008_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15581
Sequence Type Exemplar sequence
Representative Public ID F35F10.9 NCBI
Target Description F35F10.9 /REP_DB=WormBase Gene ID /WP=CE09934 /TR=Q9GYT8 /GB=AAF99938.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071512(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071512 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-1) (srbc-1) mRNA, complete cds. 11/11 None
GENEFINDER00000011256 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3295934:3301824:-1 11/11 None
F35F10.9 ENSEMBL cdna:known chromosome:CEL140:V:3298711:3301824:-1 gene:F35F10.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011245 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3298710-3301824(-) 100.0 100.0
chrV:3374381-3376899(-) 92.12 92.12
Public Domain and Genome References
Gene Title
Gene Symbol srbc-1
Ensembl F35F10.9
Entrez Gene 185314 Entrez gene
SwissProt Q9GYT8 EMBL-EBI
WormBase CE09934 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99934 Serpentine receptor, class x protein 122 [Caenorhabditis elegans] ref|NP_503912.2| Serpentine Receptor, class X family member (srx-122) [Caenorhabditis elegans] 1.0E-179
blast CAB04431 Hypothetical protein F49C5.2 [Caenorhabditis elegans] ref|NP_496677.2| Serpentine Receptor, class X family member (srx-120) [Caenorhabditis elegans] 1.0E-167
blast AAC27094 Serpentine receptor, class x protein 121 [Caenorhabditis elegans] ref|NP_503939.1| Serpentine Receptor, class X family member (srx-121) [Caenorhabditis elegans] 1.0E-162
blast AAF99938 Serpentine receptor, class bc (class b-like) protein 1 [Caenorhabditis elegans] ref|NP_503913.1| Serpentine Receptor, class BC (class B-like) family member (srbc-1) [Caenorhabditis elegans] 1.0E-160
blast AAC27086 Serpentine receptor, class bc (class b-like) protein 2 [Caenorhabditis elegans] ref|NP_503940.2| Serpentine Receptor, class BC (class B-like) family member (srbc-2) [Caenorhabditis elegans] 1.0E-156
blast NP_503896 Serpentine Receptor, class BC (class B-like) family member (srbc-5) [Caenorhabditis elegans] gb|AAC48118.3| Serpentine receptor, class bc (class b-like) protein 5 [Caenorhabditis elegans] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 7.7E-94
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 2.9E-91
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 7.1
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503913.1 7 15-36,48-70,85-107,128-150,185-204,217-239,254-276
F35F10.9 7 15-36,48-70,85-107,128-150,185-204,217-239,254-276
GENEFINDER00000011256 15 15-36,48-70,85-107,180-202,234-253,266-288,303-322,343-360,375-397,404-426,441-463,484-506,537-559,582-604,614-636
Sequence
Target Sequence 
>C. ELEGANS:185008_AT
gtagcggtgacgatgtcgattgagagggttttggccatttacacaccgattatgtttcat
aactatcgccatttatgcccttctatcttaattctaatattggctattagcttggcaatg
cttgaaaatctgattatatacctcttttgtactttaaatatatccgcaattcctcgagac
tgtggagtcttgcgttgttcacttgacaattgttatttcaactattggacaacggataga
tcggtgttatttgcgcttaactttgcattttctggtttattatctacaagactgcttctc
ttcaataaaaaacataaccataatgcaggtgaagagcatacaaagataaatcatatcgct
ttgatcgacgctgccaacgtattcttatgtgattttctcccaactttctctaactatgtt
aatgactacccattttttagtttcaagaacataggaccttatgtttacattataaagctg
gttggaagtgctgtagaatcatacttcattttcaaggttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGCGGTGACGATGTCGATTGAGA 481 457 322 Antisense
TGAGAGGGTTTTGGCCATTTACACA 308 567 342 Antisense
ACACACCGATTATGTTTCATAACTA 163 111 362 Antisense
CATAACTATCGCCATTTATGCCCTT 679 211 379 Antisense
TATGCCCTTCTATCTTAATTCTAAT 633 655 395 Antisense
TGGCTATTAGCTTGGCAATGCTTGA 322 545 422 Antisense
GATTATATACCTCTTTTGTACTTTA 53 429 453 Antisense
ATTCTTATGTGATTTTCTCCCAACT 202 11 702 Antisense
TCTCCCAACTTTCTCTAACTATGTT 75 611 717 Antisense
TGACTACCCATTTTTTAGTTTCAAG 68 567 744 Antisense
GAATCATACTTCATTTTCAAGGTTT 603 327 817 Antisense
Sequence Source Affymetrix Proprietary Database