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[185007_s_at]

Description F19F10.9 /REP_DB=WormBase Gene ID /WP=CE27372 /TR=O01524 /GB=AAK72085.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 55      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 76      6grp_total > 46      4grp_total > 55      6grp_highest_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 643
1 2 3 4 range
A 1360.6
(3)
P 		1000.3
(-2.5)
P 		982.8
(-2.8)
P 		969.9
(-3)
P 		391
B 1495
(3)
P 		960
(-2.7)
P 		1068.5
(-1.6)
P 		936.2
(-3)
P 		559
C 1487.6
(3)
P 		852
(-3)
P 		1086.3
(-0.8)
P 		997.6
(-1.6)
P 		636
avr 1447.7
(3) 		937.4
(-3) 		1045.9
(-1.7) 		967.9
(-2.6) 		510

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 825
1 2 3 4 5 6 range
A 1540
(3)
P 		1293.5
(0.6)
P 		1031.8
(-2)
P 		1146.4
(-0.9)
P 		928.7
(-3)
P 		1375.7
(1.4)
P 		611
B 1337.4
(3)
P 		1054
(-0.5)
P 		1270.5
(2.2)
P 		1263.8
(2.1)
P 		845.6
(-3)
P 		1270.4
(2.2)
P 		492
C 973.4
(-0.8)
P 		1188.6
(1)
P 		1312.2
(2)
P 		1294.6
(1.8)
P 		714.9
(-3)
P 		1432.6
(3)
P 		718
avr 1283.6
(2.1) 		1178.7
(1) 		1204.8
(1.2) 		1234.9
(1.6) 		829.7
(-3) 		1359.6
(3) 		530
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 353
1 2 3 4 range
A 495.4
(3)
P 		217.1
(-1.7)
P 		256.9
(-1)
P 		142
(-3)
P 		353
B 476.7
(3)
P 		237.1
(-2.2)
P 		247.6
(-2)
P 		199.5
(-3)
P 		277
C 492.5
(3)
P 		244.9
(-1.6)
P 		378.6
(0.9)
P 		168.2
(-3)
P 		324
avr 488.2
(3) 		233
(-1.8) 		294.4
(-0.7) 		169.9
(-3) 		318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 283.9
(-1.5)
P 		460
(3)
P 		224.7
(-3)
P 		290.8
(-1.3)
P 		280.2
(-1.6)
P 		334.9
(-0.2)
P 		235
B 465.3
(2.7)
P 		350.8
(-1.5)
P 		308.5
(-3)
P 		334.7
(-2)
P 		343.6
(-1.7)
P 		473.7
(3)
P 		165
C 360.8
(0.1)
P 		362.7
(0.2)
P 		334
(-0.5)
P 		260.3
(-2.3)
P 		231.3
(-3)
P 		479.6
(3)
P 		248
avr 370
(0.5) 		391.2
(1.4) 		289.1
(-2.8) 		295.3
(-2.6) 		285
(-3) 		429.4
(3) 		144
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185007_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12286
Sequence Type Exemplar sequence
Representative Public ID F19F10.9 NCBI
Target Description F19F10.9 /REP_DB=WormBase Gene ID /WP=CE27372 /TR=O01524 /GB=AAK72085.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072551(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072551 NCBI Caenorhabditis elegans F19F10.9 (F19F10.9) mRNA, complete cds. 11/11 None
SNAP00000016032 ENSEMBL cdna:SNAP chromosome:CEL140:V:7574690:7578216:-1 11/11 None
GENEFINDER00000016036 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7574690:7578216:-1 11/11 None
F19F10.9 ENSEMBL cdna:known chromosome:CEL140:V:7574542:7578425:-1 gene:F19F10.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7574690-7579661(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19F10.9
Entrez Gene 179140 Entrez gene
SwissProt O01524 EMBL-EBI
WormBase CE27372 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246447_AT SART-1 family protein at
CANINE_2:CFA.16739.1.S1_AT similar to squamous cell carcinoma antigen recognized by T cells 1 cfa
CANINE_2:CFA.16739.1.S1_S_AT similar to squamous cell carcinoma antigen recognized by T cells 1 cfa
CANINE_2:CFA.3939.1.S1_AT similar to squamous cell carcinoma antigen recognized by T cells 1 cfa
CANINE_2:CFAAFFX.20297.1.S1_AT similar to squamous cell carcinoma antigen recognized by T cells 1 cfa
CANINE_2:CFAAFFX.20297.1.S1_S_AT similar to squamous cell carcinoma antigen recognized by T cells 1 cfa
DROSOPHILA_2:1640134_A_AT dm
DROSGENOME1:154149_AT dm
PLASMODIUM_ANOPHELES:200051_AT squamous cell carcinoma antigen recognised by T cells hs
HG-U133A:200051_AT squamous cell carcinoma antigen recognised by T cells hs
HG-U133B:200051_AT squamous cell carcinoma antigen recognised by T cells hs
HG-U133_PLUS_2:200051_AT squamous cell carcinoma antigen recognised by T cells hs
HG-FOCUS:200051_AT squamous cell carcinoma antigen recognised by T cells hs
HG-U133A_2:200051_AT squamous cell carcinoma antigen recognised by T cells hs
U133_X3P:200051_AT squamous cell carcinoma antigen recognised by T cells hs
HU35KSUBA:D82373_AT squamous cell carcinoma antigen recognised by T cells hs
HU35KSUBB:RC_AA159334_AT squamous cell carcinoma antigen recognised by T cells hs
HU35KSUBD:RC_AA424068_AT squamous cell carcinoma antigen recognised by T cells hs
HU35KSUBD:RC_AA599522_F_AT squamous cell carcinoma antigen recognised by T cells hs
HU35KSUBD:RC_AA599522_R_AT squamous cell carcinoma antigen recognised by T cells hs
U133_X3P:G10863888_3P_AT squamous cell carcinoma antigen recognised by T cells hs
HG-U95AV2:33706_AT squamous cell carcinoma antigen recognised by T cells hs
HG-U95B:50455_AT squamous cell carcinoma antigen recognised by T cells hs
MG-U74AV2:98449_AT squamous cell carcinoma antigen recognized by T-cells 1 mm
MG-U74BV2:165353_F_AT squamous cell carcinoma antigen recognized by T-cells 1 mm
MOE430A:1448658_AT squamous cell carcinoma antigen recognized by T-cells 1 mm
MOUSE430A_2:1448658_AT squamous cell carcinoma antigen recognized by T-cells 1 mm
MOUSE430_2:1448658_AT squamous cell carcinoma antigen recognized by T-cells 1 mm
MOE430B:1442284_AT Squamous cell carcinoma antigen recognized by T-cells 1, mRNA (cDNA clone MGC:37798 IMAGE:5097832) mm
MOUSE430_2:1442284_AT Squamous cell carcinoma antigen recognized by T-cells 1, mRNA (cDNA clone MGC:37798 IMAGE:5097832) mm
MU19KSUBA:TC25734_AT Squamous cell carcinoma antigen recognized by T-cells 1, mRNA (cDNA clone MGC:37798 IMAGE:5097832) mm
MU19KSUBB:TC31017_AT Squamous cell carcinoma antigen recognized by T-cells 1, mRNA (cDNA clone MGC:37798 IMAGE:5097832) mm
RAE230A:1387012_AT squamous cell carcinoma antigen recognized by T-cells 1 rn
RAT230_2:1387012_AT squamous cell carcinoma antigen recognized by T-cells 1 rn
RG-U34A:AB014722_AT squamous cell carcinoma antigen recognized by T-cells 1 rn
RG-U34A:AB014722_G_AT squamous cell carcinoma antigen recognized by T-cells 1 rn
RG-U34C:RC_AI228721_AT squamous cell carcinoma antigen recognized by T-cells 1 rn
Protein Similarities
Method ID Description E-Value
blast AAK72085 Hypothetical protein F19F10.9 [Caenorhabditis elegans] ref|NP_504952.1| F19F10.9 [Caenorhabditis elegans] 0.0
blast T25713 hypothetical protein F19F10.9 - Caenorhabditis elegans 0.0
blast CAE74645 Hypothetical protein CBG22442 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005011 EMBL-EBI SART-1 protein 1.0E-126
Pfam IPR005011 EMBL-EBI SART-1 protein 1.0E-126
Pfam IPR005011 EMBL-EBI SART-1 protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185007_S_AT
ccagctctcggccaggaagttgatgtatcgaagggtgtcggtcgaatgctcaaactggct
ggacaaaaaggatatcttcaaaatccgaatgcaaaatctcattcaggaccttctctggat
catttgaaaaacaaaactacacagcgaatcgatggacaaagatttgaccccgatgatcgt
aacgccaaaaaagctgatcgtctgaactctcaacaccgtggaccagttatgccattcgcg
gagaagcacgactacaagcctgatgttaacataagttatgtagacagaaaaggccgtgaa
atggatgccaaagatgcgtacagagagctatcatacaagttccatggtcgcaatccgggt
aagaaacagttggagaaacgagctaatcgtaaggacaaagaggagagaatgctcaagaca
aacagttacgacactccactgggaactcttgataagcagcgcaaaaagcaaaaacaatta
tccacaccgtatcttgtgctcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCTCTCGGCCAGGAAGTTGATG 273 273 2140 Antisense
GTCGGTCGAATGCTCAAACTGGCTG 176 471 2176 Antisense
GCAAAATCTCATTCAGGACCTTCTC 383 319 2230 Antisense
AGGACCTTCTCTGGATCATTTGAAA 683 55 2244 Antisense
TGACCCCGATGATCGTAACGCCAAA 533 567 2304 Antisense
AAAGCTGATCGTCTGAACTCTCAAC 118 125 2329 Antisense
CCGTGGACCAGTTATGCCATTCGCG 186 265 2355 Antisense
GAAGCACGACTACAAGCCTGATGTT 393 341 2382 Antisense
TTCCATGGTCGCAATCCGGGTAAGA 675 677 2479 Antisense
TTACGACACTCCACTGGGAACTCTT 677 679 2565 Antisense
TATCCACACCGTATCTTGTGCTCAG 115 659 2618 Antisense
Sequence Source Affymetrix Proprietary Database