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[185006_at]

Description T07F12.3 /REP_DB=WormBase Gene ID /WP=CE02867 /TR=Q22321 /GB=AAA68417.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 20      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 135.1
(2.3)
A 		101.5
(-1.3)
A 		85.2
(-3)
A 		141.2
(3)
P 		56
B 101.9
(-2.4)
A 		111.5
(-1.7)
A 		92.9
(-3)
A 		178.4
(3)
P 		86
C 94.3
(-1.6)
A 		117.9
(-0.4)
A 		68.6
(-3)
A 		180.3
(3)
P 		112
avr 110.4
(-1) 		110.3
(-1) 		82.2
(-3) 		166.6
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 120.3
(3)
A 		60
(-2.4)
A 		107.7
(1.9)
P 		57.8
(-2.6)
A 		61.7
(-2.2)
A 		53.1
(-3)
A 		67
B 75.7
(0.2)
A 		101.1
(3)
A 		47.3
(-3)
A 		80.2
(0.7)
A 		98.4
(2.7)
A 		62.7
(-1.3)
A 		54
C 87.7
(-0.3)
A 		116.6
(1.9)
A 		96.9
(0.4)
A 		130.6
(3)
A 		56.9
(-2.7)
A 		52.7
(-3)
A 		78
avr 94.6
(3) 		92.6
(2.7) 		84
(1.3) 		89.5
(2.2) 		72.3
(-0.5) 		56.2
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 49.2
(3)
A 		22
(-2.7)
A 		22.3
(-2.7)
A 		20.7
(-3)
P 		29
B 32.5
(1)
A 		27.5
(-0.8)
A 		21.5
(-3)
A 		38
(3)
P 		17
C 31.2
(1.4)
A 		33.9
(3)
A 		23.9
(-3)
A 		30.4
(0.9)
P 		10
avr 37.6
(3) 		27.8
(-0.9) 		22.6
(-3) 		29.7
(-0.2) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 22.2
(2.3)
A 		21.3
(1.8)
A 		23.5
(3)
P 		14.7
(-2)
A 		18.6
(0.2)
A 		12.9
(-3)
A 		11
B 26.3
(0.1)
A 		33.6
(1.7)
A 		11.5
(-3)
A 		21.2
(-1)
A 		40
(3)
A 		23.4
(-0.5)
A 		29
C 32.5
(2)
A 		35.6
(3)
A 		24.7
(-0.6)
A 		26.3
(-0.1)
A 		18.4
(-2.7)
A 		17.6
(-3)
A 		18
avr 27
(1.4) 		30.2
(3) 		19.9
(-2.1) 		20.7
(-1.7) 		25.7
(0.8) 		18
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185006_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17220
Sequence Type Exemplar sequence
Representative Public ID T07F12.3 NCBI
Target Description T07F12.3 /REP_DB=WormBase Gene ID /WP=CE02867 /TR=Q22321 /GB=AAA68417.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076429(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076429 NCBI Caenorhabditis elegans T07F12.3 (T07F12.3) mRNA, complete cds. 10/11 None
SNAP00000035171 ENSEMBL cdna:SNAP chromosome:CEL140:X:4886363:4889495:1 10/11 None
GENEFINDER00000035177 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4886363:4889495:1 10/11 None
T07F12.3 ENSEMBL cdna:known chromosome:CEL140:X:4885919:4889530:1 gene:T07F12.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4885900-4889496(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07F12.3
Entrez Gene 188239 Entrez gene
SwissProt Q22321 EMBL-EBI
WormBase CE35759 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68417 Hypothetical protein T07F12.3 [Caenorhabditis elegans] ref|NP_508830.3| T07F12.3 [Caenorhabditis elegans] 0.0
blast CAE68660 Hypothetical protein CBG14561 [Caenorhabditis briggsae] 0.0
blast CAE68660 Hypothetical protein CBG14561 [Caenorhabditis briggsae] 1.0E-103
blast NP_001004561 arrestin domain containing 1 [Danio rerio] emb|CAE49089.1| novel protein [Danio rerio] gb|AAH81631.1| Arrestin domain containing 1 [Danio rerio] 5.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 1.1E-8
Pfam IPR000698 EMBL-EBI Arrestin 8.5E-24
Pfam IPR000698 EMBL-EBI Arrestin 8.5E-24
Pfam IPR000698 EMBL-EBI Arrestin 1.1E-8
Pfam IPR000698 EMBL-EBI Arrestin 8.5E-24
Sequence
Target Sequence 
>C. ELEGANS:185006_AT
aaaaagtccatattccatgcaccgctccatctacaccacttccgatacttttccgctcag
gacaattggacggaaacaagttccagcttcgacgtaaatcgcaactagggagattatctc
ttacaagtcaaaagtcacgacaatcaatctcctcgacgtccaacatgcaacggattttgg
cgatcacatccgatccacttgatcgcccagtgattaacctttgccgccaagacaaaccaa
ttcctttgttggacgagaaagaaagaagtttatgtaataaagctcagctgcaacatgtga
acaaatatccattttttgcaactcttccaacatcgtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAAGTCCATATTCCATGCACCGC 638 129 971 Antisense
GATACTTTTCCGCTCAGGACAATTG 75 423 1014 Antisense
GTTCCAGCTTCGACGTAAATCGCAA 663 439 1050 Antisense
AGTCACGACAATCAATCTCCTCGAC 152 61 1103 Antisense
TCCTCGACGTCCAACATGCAACGGA 382 591 1120 Antisense
TGCAACGGATTTTGGCGATCACATC 172 577 1136 Antisense
GATCACATCCGATCCACTTGATCGC 684 421 1152 Antisense
TGATCGCCCAGTGATTAACCTTTGC 99 563 1170 Antisense
TAACCTTTGCCGCCAAGACAAACCA 326 629 1185 Antisense
AAAGCTCAGCTGCAACATGTGAACA 203 125 1249 Antisense
TTTGCAACTCTTCCAACATCGTCAA 206 669 1285 Antisense
Sequence Source Affymetrix Proprietary Database