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[185003_s_at]

Description F52F10.3 /REP_DB=WormBase Gene ID /WP=CE19883 /TR=Q9UAQ8 /GB=AAC69231.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 67      6grp_total > 67      4grp_total > 62      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 92.4
(3)
A 		31.8
(-1.4)
A 		72.1
(1.5)
A 		9.8
(-3)
A 		83
B 56.4
(0.8)
A 		40.2
(-2.2)
A 		68.4
(3)
A 		35.7
(-3)
A 		33
C 93.7
(3)
A 		69.3
(0.8)
A 		41.8
(-1.7)
A 		27
(-3)
A 		67
avr 80.8
(3) 		47.1
(-0.6) 		60.8
(0.9) 		24.2
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 462
1 2 3 4 5 6 range
A 129.3
(-2.3)
P 		93
(-3)
P 		93.4
(-2.9)
P 		94.1
(-2.9)
P 		90.3
(-3)
P 		449.8
(3)
P 		360
B 163.9
(-1.4)
P 		94.2
(-2.3)
P 		100.2
(-2.3)
P 		99.2
(-2.3)
P 		43.6
(-3)
A 		505.1
(3)
P 		462
C 95.4
(-2.4)
P 		92.7
(-2.5)
P 		102.1
(-2.3)
P 		105.7
(-2.3)
A 		56.3
(-3)
A 		458.8
(3)
P 		403
avr 129.5
(-2) 		93.3
(-2.6) 		98.6
(-2.5) 		99.7
(-2.5) 		63.4
(-3) 		471.2
(3) 		408
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 33.6
(3)
A 		6.9
(-2)
A 		18.9
(0.3)
A 		1.4
(-3)
A 		32
B 18
(3)
A 		9.9
(-1.7)
A 		15.8
(1.7)
A 		7.6
(-3)
A 		10
C 31
(3)
A 		19.9
(0.5)
A 		14.6
(-0.7)
A 		4.5
(-3)
A 		27
avr 27.5
(3) 		12.2
(-1) 		16.4
(0.1) 		4.5
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 23.8
(-2.8)
P 		33.1
(-2.1)
P 		20.3
(-3)
P 		23.9
(-2.8)
P 		27.3
(-2.5)
P 		109.5
(3)
P 		89
B 57
(-1.6)
P 		31.4
(-2.5)
P 		24.3
(-2.8)
P 		26.3
(-2.7)
P 		17.7
(-3)
A 		188.4
(3)
P 		171
C 35.4
(-2.2)
P 		28.3
(-2.6)
P 		26
(-2.7)
P 		21.3
(-2.9)
A 		18.2
(-3)
A 		153.6
(3)
P 		135
avr 38.7
(-2.2) 		30.9
(-2.5) 		23.5
(-2.9) 		23.8
(-2.9) 		21.1
(-3) 		150.5
(3) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185003_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15533
Sequence Type Exemplar sequence
Representative Public ID F52F10.3 NCBI
Target Description F52F10.3 /REP_DB=WormBase Gene ID /WP=CE19883 /TR=Q9UAQ8 /GB=AAC69231.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071040(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071040 NCBI Caenorhabditis elegans F52F10.3 (F52F10.3) mRNA, complete cds. 11/11 A 
SNAP00000019918 ENSEMBL cdna:SNAP chromosome:CEL140:V:1538263:1541545:-1 11/11 None
GENEFINDER00000019923 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1538263:1541545:-1 11/11 None
F52F10.3 ENSEMBL cdna:known chromosome:CEL140:V:1538194:1541653:-1 gene:F52F10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1538262-1541545(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52F10.3
Entrez Gene 178643 Entrez gene
SwissProt Q9UAQ8 EMBL-EBI
WormBase CE19883 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1638003_AT dm
DROSGENOME1:145376_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69231 Hypothetical protein F52F10.3 [Caenorhabditis elegans] ref|NP_503441.1| F52F10.3 [Caenorhabditis elegans] 0.0
blast CAE62486 Hypothetical protein CBG06590 [Caenorhabditis briggsae] 0.0
blast AAC69230 Hypothetical protein F52F10.4 [Caenorhabditis elegans] ref|NP_503442.1| F52F10.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.2E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503441.1 12 173-195,210-230,243-262,282-304,328-350,397-419,421-443,469-491,498-520,540-562,583-605,609-631
F52F10.3 12 173-195,210-230,243-262,282-304,328-350,397-419,421-443,469-491,498-520,540-562,583-605,609-631
SNAP00000019918 12 173-195,210-230,243-262,282-304,328-350,397-419,421-443,469-491,498-520,540-562,583-605,609-631
GENEFINDER00000019923 12 173-195,210-230,243-262,282-304,328-350,397-419,421-443,469-491,498-520,540-562,583-605,609-631
Sequence
Target Sequence 
>C. ELEGANS:185003_S_AT
tagtgggacttctcactgggtacctgctagctacttatggaactagaaggatccgattga
attgggcagtctcgattggtgtttggattgtggcatttgtggttgctggattctgtatat
tttcaacgtacgattatgacaagggagagcagtggagcacgttttctagagccacattct
tcaattttcatcgactaggttggggagtattcgtgtgctgggtcgttggagcaaaccata
tgggatggggtggacctattgatactttcatgtcacatccaatttggcaaccgtttggaa
ggttatcatactgtgcttatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTGGGACTTCTCACTGGGTACCT 364 625 1442 Antisense
GGGTACCTGCTAGCTACTTATGGAA 520 493 1459 Antisense
GGATCCGATTGAATTGGGCAGTCTC 648 511 1490 Antisense
TGGGCAGTCTCGATTGGTGTTTGGA 485 553 1504 Antisense
CATTTGTGGTTGCTGGATTCTGTAT 599 213 1535 Antisense
GCAGTGGAGCACGTTTTCTAGAGCC 497 311 1590 Antisense
CTAGAGCCACATTCTTCAATTTTCA 92 225 1607 Antisense
AGTATTCGTGTGCTGGGTCGTTGGA 340 51 1647 Antisense
GGGGTGGACCTATTGATACTTTCAT 9 497 1688 Antisense
GATACTTTCATGTCACATCCAATTT 682 423 1702 Antisense
GAAGGTTATCATACTGTGCTTATAT 234 335 1739 Antisense
Sequence Source Affymetrix Proprietary Database