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[185002_at]

Description F56E10.2 /REP_DB=WormBase Gene ID /WP=CE23783 /TR=Q9TXP2 /GB=AAC69221.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 44      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 145.6
(0.8)
A 		118.7
(-3)
A 		142.3
(0.4)
A 		160.8
(3)
P 		42
B 149.2
(-0.5)
A 		272.9
(3)
A 		61.5
(-3)
A 		112.8
(-1.5)
P 		211
C 162.7
(-0.4)
A 		211.7
(3)
A 		137
(-2.1)
A 		124.2
(-3)
A 		88
avr 152.5
(-0.3) 		201.1
(3) 		113.6
(-3) 		132.6
(-1.7) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 164.5
(3)
A 		108.2
(-0.9)
A 		77.1
(-3)
A 		121.2
(0)
A 		144
(1.6)
A 		115.7
(-0.4)
A 		87
B 112.6
(0.8)
A 		132.6
(3)
A 		104.6
(-0.1)
A 		132.1
(2.9)
A 		78.6
(-3)
M 		88.1
(-1.9)
A 		54
C 90.3
(-1.9)
A 		151.7
(1.7)
P 		129.9
(0.5)
A 		73.2
(-2.9)
A 		173.1
(3)
M 		70.9
(-3)
A 		102
avr 122.5
(1.6) 		130.8
(2.8) 		103.9
(-1.2) 		108.8
(-0.4) 		131.9
(3) 		91.6
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 53
(3)
A 		25.8
(-2.5)
A 		37.2
(-0.2)
A 		23.5
(-3)
P 		30
B 47.6
(0.8)
A 		67.4
(3)
A 		14.3
(-3)
A 		24
(-1.9)
P 		53
C 53.9
(2)
A 		60.9
(3)
A 		47.8
(1)
A 		20.9
(-3)
A 		40
avr 51.5
(3) 		51.4
(3) 		33.1
(-0.8) 		22.8
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 30.3
(0)
A 		38.5
(1.9)
A 		16.8
(-3)
A 		30.7
(0.1)
A 		43.4
(3)
A 		28.2
(-0.4)
A 		27
B 39.2
(1.4)
A 		44.1
(3)
A 		25.4
(-3)
A 		35
(0.1)
A 		32
(-0.9)
M 		32.8
(-0.6)
A 		19
C 33.5
(-0.3)
A 		46.3
(1.6)
P 		33.1
(-0.3)
A 		14.7
(-3)
A 		56
(3)
M 		23.7
(-1.7)
A 		41
avr 34.3
(-0) 		43
(2.7) 		25.1
(-3) 		26.8
(-2.5) 		43.8
(3) 		28.2
(-2) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185002_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15090
Sequence Type Exemplar sequence
Representative Public ID F56E10.2 NCBI
Target Description F56E10.2 /REP_DB=WormBase Gene ID /WP=CE23783 /TR=Q9TXP2 /GB=AAC69221.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070731(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070731 NCBI Caenorhabditis elegans F56E10.2 (F56E10.2) mRNA, complete cds. 11/11 None
SNAP00000024058 ENSEMBL cdna:SNAP chromosome:CEL140:V:65432:68753:-1 11/11 None
GENEFINDER00000024062 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:65951:70834:-1 9/11 None
F56E10.2 ENSEMBL cdna:known chromosome:CEL140:V:64392:70834:-1 gene:F56E10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:65431-70834(-) 92.27 93.49
Public Domain and Genome References
Gene Title
Gene Symbol fhod-2
Ensembl F56E10.2
Entrez Gene 186392 Entrez gene
SwissProt Q9TXP2 EMBL-EBI
WormBase CE32443 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605257_AT similar to dishevelled-associated activator of morphogenesis 1 cfa
CANINE_2:CFAAFFX.23818.1.S1_S_AT similar to dishevelled-associated activator of morphogenesis 1 cfa
DROSOPHILA_2:1629015_A_AT dm
DROSGENOME1:144082_AT dm
CHICKEN:GGAAFFX.7621.1.S1_S_AT similar to dishevelled-associated activator of morphogenesis 1 gga
HG-U95AV2:33753_AT dishevelled associated activator of morphogenesis 1 hs
HU35KSUBC:RC_AA609681_AT dishevelled associated activator of morphogenesis 1 hs
HG-U133_PLUS_2:216060_S_AT dishevelled associated activator of morphogenesis 1 hs
HG-U133A_2:216060_S_AT dishevelled associated activator of morphogenesis 1 hs
HG-U133A:216060_S_AT dishevelled associated activator of morphogenesis 1 hs
U133_X3P:HS.197751.2.S1_3P_A_AT dishevelled associated activator of morphogenesis 1 hs
U133_X3P:HS.287601.0.S1_3P_AT Dishevelled associated activator of morphogenesis 1 hs
U133_X3P:HS.186257.0.A1_3P_AT Dishevelled associated activator of morphogenesis 1 hs
HG-U133_PLUS_2:232552_AT Dishevelled associated activator of morphogenesis 1 hs
HG-U133B:232552_AT Dishevelled associated activator of morphogenesis 1 hs
HG-U133_PLUS_2:244062_AT Dishevelled associated activator of morphogenesis 1 hs
HG-U133B:244062_AT Dishevelled associated activator of morphogenesis 1 hs
HG-U95E:67510_AT Dishevelled associated activator of morphogenesis 1 hs
HG-U95D:68239_AT Dishevelled associated activator of morphogenesis 1 hs
HG-U133_PLUS_2:1555989_AT Dishevelled associated activator of morphogenesis 1 hs
HG-U133_PLUS_2:226666_AT Dishevelled associated activator of morphogenesis 1 hs
HG-U133B:226666_AT Dishevelled associated activator of morphogenesis 1 hs
HG-U95B:42690_AT Dishevelled associated activator of morphogenesis 1 hs
HG-U95B:49389_AT Dishevelled associated activator of morphogenesis 1 hs
HG-U95D:86575_AT Dishevelled associated activator of morphogenesis 1 hs
HG-U95D:90790_AT Dishevelled associated activator of morphogenesis 1 hs
HU35KSUBA:N95742_AT Dishevelled associated activator of morphogenesis 1 hs
HU35KSUBC:RC_AA504340_AT Dishevelled associated activator of morphogenesis 1 hs
HU35KSUBA:RC_AA034063_AT Dishevelled associated activator of morphogenesis 1 hs
HU35KSUBD:RC_R28297_AT Dishevelled associated activator of morphogenesis 1 hs
U133_X3P:HS.197751.0.A1_3P_AT Dishevelled associated activator of morphogenesis 1 hs
U133_X3P:HS2.356537.1.A1_3P_AT Dishevelled associated activator of morphogenesis 1 hs
MOE430B:1431035_AT dishevelled associated activator of morphogenesis 1 mm
MOUSE430_2:1431035_AT dishevelled associated activator of morphogenesis 1 mm
MG-U74BV2:106151_AT dishevelled associated activator of morphogenesis 1 mm
MG-U74BV2:113326_AT dishevelled associated activator of morphogenesis 1 mm
MG-U74CV2:166384_AT dishevelled associated activator of morphogenesis 1 mm
MOE430B:1455244_AT dishevelled associated activator of morphogenesis 1 mm
MOUSE430_2:1455244_AT dishevelled associated activator of morphogenesis 1 mm
MOE430B:1458662_AT dishevelled associated activator of morphogenesis 1 mm
MOUSE430_2:1458662_AT dishevelled associated activator of morphogenesis 1 mm
MG-U74BV2:116745_AT Dishevelled associated activator of morphogenesis 1 (Daam1), mRNA mm
RAT230_2:1397191_AT dishevelled associated activator of morphogenesis 1 (predicted) rn
RAE230B:1397191_AT dishevelled associated activator of morphogenesis 1 (predicted) rn
RAE230A:1374480_AT Dishevelled associated activator of morphogenesis 1 (predicted) rn
RAT230_2:1374480_AT Dishevelled associated activator of morphogenesis 1 (predicted) rn
RAE230A:1389318_AT Dishevelled associated activator of morphogenesis 1 (predicted) rn
RAT230_2:1389318_AT Dishevelled associated activator of morphogenesis 1 (predicted) rn
RAE230B:1398184_AT Dishevelled associated activator of morphogenesis 1 (predicted) rn
RAT230_2:1398184_AT Dishevelled associated activator of morphogenesis 1 (predicted) rn
RG-U34C:RC_AI232408_AT Dishevelled associated activator of morphogenesis 1 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3779 actin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69221 Hypothetical protein F56E10.2 [Caenorhabditis elegans] ref|NP_503132.2| F56E10.2 [Caenorhabditis elegans] 0.0
blast CAE62360 Hypothetical protein CBG06440 [Caenorhabditis briggsae] 0.0
blast XP_852088 PREDICTED: similar to dishevelled-associated activator of morphogenesis 1 isoform 2 [Canis familiaris] 3.0E-77
blast XP_852088 PREDICTED: similar to dishevelled-associated activator of morphogenesis 1 isoform 2 [Canis familiaris] 4.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR010472 EMBL-EBI Diaphanous FH3 2.1E-79
Pfam IPR003104 EMBL-EBI Actin-binding FH2 1.0E-126
Pfam IPR010472 EMBL-EBI Diaphanous FH3 3.5E-45
Pfam IPR003104 EMBL-EBI Actin-binding FH2 1.0E-126
Pfam IPR010472 EMBL-EBI Diaphanous FH3 2.2E-72
Pfam IPR003104 EMBL-EBI Actin-binding FH2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185002_AT
agaagtacccagacctcacaaaattcaagaaggacttcgccaccgtaacagaggccgccc
ggtttagccagtctgaaactgcagctgaaattcggaatcttgaagaggcgctgctcattg
tgaggaaagagctgaacctgttagagtccaccacaaaagttgagctccccgagcacattc
cgccggagaacgatcgattcgcgctggtggcgaaagctttcatcgagaaggctactgcag
agtatcacaacttggataaaatgttcagggagatgaagaataagttctccgattgcgcca
aatacttttgctattccccgtccggaggtgtcccagtaccggaagaatttttctcggtta
tcaacaaattcttgaacactttcaacgagtatcatcagcagttgtgggctgaagttgagg
aagaggagaaaattaagcggcagacaattgccaggtcgtttttggccaagaaatccacaa
cacgccgtaaggaaaaccacaaagaacgagatttcgagcaactgataagtgctctccaat
ccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGTACCCAGACCTCACAAAATT 213 75 2504 Antisense
GCCCGGTTTAGCCAGTCTGAAACTG 113 287 2560 Antisense
GAAGAGGCGCTGCTCATTGTGAGGA 334 339 2605 Antisense
GAGCTGAACCTGTTAGAGTCCACCA 708 385 2632 Antisense
AAAAGTTGAGCTCCCCGAGCACATT 226 133 2658 Antisense
GCCGGAGAACGATCGATTCGCGCTG 356 283 2685 Antisense
CGCGCTGGTGGCGAAAGCTTTCATC 6 257 2703 Antisense
TAAGTTCTCCGATTGCGCCAAATAC 581 637 2784 Antisense
GCGCCAAATACTTTTGCTATTCCCC 544 287 2798 Antisense
GGAGGTGTCCCAGTACCGGAAGAAT 132 517 2827 Antisense
AACTGATAAGTGCTCTCCAATCCGG 176 143 3023 Antisense
Sequence Source Affymetrix Proprietary Database