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[185001_at]

Description C08F11.13 /REP_DB=WormBase Gene ID /WP=CE27799 /TR=O62054 /GB=CAB05679.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 07      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 41      6grp_total > 14      4grp_total > 13      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 728
1 2 3 4 range
A 765
(1.3)
P 		354.1
(-2.7)
P 		318.5
(-3)
P 		943.2
(3)
P 		625
B 686.9
(0.5)
P 		401.5
(-2)
P 		281.4
(-3)
P 		977.3
(3)
P 		696
C 711.2
(0.4)
P 		401.5
(-2.3)
P 		324.8
(-3)
P 		1009.4
(3)
P 		685
avr 721
(0.7) 		385.7
(-2.3) 		308.2
(-3) 		976.6
(3) 		668

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 664
1 2 3 4 5 6 range
A 1126.1
(3)
P 		783.8
(-0.6)
P 		766.9
(-0.7)
P 		790.5
(-0.5)
P 		550.9
(-3)
P 		643.1
(-2)
P 		575
B 900.2
(3)
P 		716.7
(0.4)
P 		475.9
(-3)
P 		703.4
(0.2)
P 		571.3
(-1.7)
P 		496.2
(-2.7)
P 		424
C 1011.1
(3)
P 		832.1
(1)
P 		863.4
(1.4)
P 		837.9
(1.1)
P 		464.9
(-3)
P 		461.9
(-3)
P 		549
avr 1012.5
(3) 		777.5
(0.1) 		702.1
(-0.9) 		777.3
(0.1) 		529
(-3) 		533.7
(-2.9) 		484
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 278.5
(3)
P 		76.9
(-3)
P 		83.3
(-2.8)
P 		138.1
(-1.2)
P 		202
B 219
(3)
P 		99.2
(-1.7)
P 		65.2
(-3)
P 		208.3
(2.6)
P 		154
C 235.4
(3)
P 		115.4
(-2.9)
P 		113.2
(-3)
P 		170.2
(-0.2)
P 		122
avr 244.3
(3) 		97.2
(-2.6) 		87.2
(-3) 		172.2
(0.2) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 207.6
(-0.5)
P 		278.8
(3)
P 		167
(-2.5)
P 		200.5
(-0.8)
P 		166.2
(-2.5)
P 		156.6
(-3)
P 		122
B 313.2
(3)
P 		238.6
(0.7)
P 		115.6
(-3)
P 		186.3
(-0.9)
P 		232.1
(0.5)
P 		185
(-0.9)
P 		198
C 374.8
(3)
P 		253.9
(-0.2)
P 		219.8
(-1.1)
P 		168.5
(-2.5)
P 		150.4
(-3)
P 		154.6
(-2.9)
P 		224
avr 298.5
(3) 		257.1
(1.1) 		167.5
(-2.9) 		185.1
(-2.1) 		182.9
(-2.2) 		165.4
(-3) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185001_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9058
Sequence Type Exemplar sequence
Representative Public ID C08F11.13 NCBI
Target Description C08F11.13 /REP_DB=WormBase Gene ID /WP=CE27799 /TR=O62054 /GB=CAB05679.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070224 NCBI Caenorhabditis elegans C08F11.13 (C08F11.13) mRNA, complete cds. 11/11 A 
GENEFINDER00000042608 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13607643:13609796:-1 10/11 None
C08F11.13.1 ENSEMBL cdna:known chromosome:CEL140:IV:13607409:13609852:-1 gene:C08F11.13 11/11 A 
C08F11.13.2 ENSEMBL cdna:known chromosome:CEL140:IV:13607423:13609838:-1 gene:C08F11.13 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042594 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13609087-13610003(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F11.13
Entrez Gene 178327 Entrez gene
SwissProt O62054 EMBL-EBI
WormBase CE27799 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05679 Hypothetical protein C08F11.13 [Caenorhabditis elegans] ref|NP_502625.1| C08F11.13 [Caenorhabditis elegans] 0.0
blast CAB05679 Hypothetical protein C08F11.13 [Caenorhabditis elegans] ref|NP_502625.1| C08F11.13 [Caenorhabditis elegans] 1.0E-155
blast CAB05575 Hypothetical protein F56G4.1 [Caenorhabditis elegans] emb|CAB04489.1| Hypothetical protein F56G4.1 [Caenorhabditis elegans] ref|NP_492908.1| F56G4.1 [Caenorhabditis elegans] 6.0E-16
blast CAB05575 Hypothetical protein F56G4.1 [Caenorhabditis elegans] emb|CAB04489.1| Hypothetical protein F56G4.1 [Caenorhabditis elegans] ref|NP_492908.1| F56G4.1 [Caenorhabditis elegans] 6.0E-14
blast CAE74571 Hypothetical protein CBG22335 [Caenorhabditis briggsae] 1.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502625.1 10 38-57,67-89,121-138,153-175,188-210,220-242,263-285,295-317,334-354,369-391
C08F11.13.1 10 38-57,67-89,121-138,153-175,188-210,220-242,263-285,295-317,334-354,369-391
C08F11.13.2 10 38-57,67-89,121-138,153-175,188-210,220-242,263-285,295-317,334-354,369-391
GENEFINDER00000042608 8 38-57,67-89,121-138,153-175,188-210,220-242,263-285,295-317
Sequence
Target Sequence 
>C. ELEGANS:185001_AT
ttctcttcaacacaacttcactagtttgaagtcgacgtctatgagtgaaaaatgtggttc
caagttttttgaaactggggacgaaaaacaaaatttggatggtcaaaatggtgattatgc
tccaggaaaaatcgagttattgctgaaaaagctcaacccaattctcatctcattctcaac
atatcctttatatatcctcattcttataattgcatcggaaagtgaattgctctcaaacat
tgtaccaattcctctgatcctcggacttttcgccacttttgaactgttcgacttgctttt
gctgaaccctccaagacgttataaaaatggattgcaattggaaacaattgtgctgccaga
agaagacgatttcaatgagttcaaaggaaaaatcagaagaatcgaaatttttcactgttt
cactttgttgttttcaatctgggcatttaatgtgagctgctccaaaatactccgcgaaat
tctttctccttccaactacaatttgtattctctcataggtattatcatctctcttctcgt
gttgttcacagttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCTTCAACACAACTTCACTAGT 461 679 174 Antisense
TCATCTCATTCTCAACATATCCTTT 150 621 338 Antisense
TATCCTTTATATATCCTCATTCTTA 670 657 355 Antisense
AACATTGTACCAATTCCTCTGATCC 77 139 409 Antisense
TTGAACTGTTCGACTTGCTTTTGCT 162 705 452 Antisense
TTGCTGAACCCTCCAAGACGTTATA 474 693 472 Antisense
TTCACTGTTTCACTTTGTTGTTTTC 257 687 584 Antisense
TGTGAGCTGCTCCAAAATACTCCGC 120 557 624 Antisense
AATACTCCGCGAAATTCTTTCTCCT 186 173 639 Antisense
ATAGGTATTATCATCTCTCTTCTCG 128 23 688 Antisense
TCTCTTCTCGTGTTGTTCACAGTTT 387 613 703 Antisense
Sequence Source Affymetrix Proprietary Database