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[185000_at] 7TM chemoreceptor, srsx family

Description F52F10.5 /REP_DB=WormBase Gene ID /WP=CE19885 /TR=Q9UAR1 /GB=AAC69229.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 09      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 31.5
(-1.7)
A 		48.4
(3)
A 		45.9
(2.3)
A 		26.9
(-3)
A 		22
B 41
(2)
A 		9.3
(-3)
A 		47.2
(3)
A 		24.2
(-0.6)
A 		38
C 10.4
(-2.7)
A 		36.3
(-1.2)
A 		6.2
(-3)
A 		106.7
(3)
P 		101
avr 27.6
(-3) 		31.3
(-2.1) 		33.1
(-1.7) 		52.6
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 83.1
(3)
A 		3.9
(-3)
A 		24.3
(-1.5)
A 		47.6
(0.3)
A 		64.5
(1.6)
A 		14.9
(-2.2)
A 		79
B 59.3
(0.8)
A 		33.7
(-2.1)
A 		33.7
(-2.1)
A 		78.4
(3)
A 		33.7
(-2.1)
A 		25.7
(-3)
A 		53
C 32.8
(1.2)
A 		46
(3)
A 		7.2
(-2.3)
A 		29.8
(0.8)
A 		25.1
(0.1)
A 		2.4
(-3)
A 		44
avr 58.4
(3) 		27.9
(-1.1) 		21.7
(-2) 		51.9
(2.1) 		41.1
(0.6) 		14.3
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 11.5
(2.6)
A 		10.5
(1.9)
A 		12
(3)
A 		3.9
(-3)
A 		8
B 13.1
(3)
A 		2.3
(-3)
A 		10.9
(1.8)
A 		5.2
(-1.4)
A 		11
C 3.5
(-2.5)
A 		10.5
(0.2)
A 		2.2
(-3)
A 		18
(3)
P 		16
avr 9.4
(3) 		7.8
(-3) 		8.4
(-0.7) 		9
(1.5) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 15.3
(1.6)
A 		1.4
(-3)
A 		5.3
(-1.7)
A 		12.1
(0.5)
A 		19.5
(3)
A 		3.6
(-2.3)
A 		18
B 20.6
(2.9)
A 		11.2
(-1.6)
A 		8.2
(-3)
A 		20.8
(3)
A 		13.7
(-0.4)
A 		9.6
(-2.3)
A 		13
C 12.2
(2.2)
A 		14
(3)
A 		1.8
(-2.5)
A 		6
(-0.6)
A 		8.1
(0.3)
A 		0.8
(-3)
A 		13
avr 16
(3) 		8.9
(-0.8) 		5.1
(-2.8) 		13
(1.4) 		13.8
(1.8) 		4.7
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185000_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14932
Sequence Type Exemplar sequence
Representative Public ID F52F10.5 NCBI
Target Description F52F10.5 /REP_DB=WormBase Gene ID /WP=CE19885 /TR=Q9UAR1 /GB=AAC69229.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071043(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071043 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-8) (srsx-8) mRNA, complete cds. 11/11 None
GENEFINDER00000019924 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1550873:1552931:-1 11/11 None
F52F10.5 ENSEMBL cdna:known chromosome:CEL140:V:1550873:1554162:-1 gene:F52F10.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019920 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1550872-1554162(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srsx family
Gene Symbol srsx-8
Ensembl F52F10.5
Entrez Gene 186126 Entrez gene
SwissProt Q9UAR1 EMBL-EBI
WormBase CE38192 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69229 Serpentine receptor, class sx protein 8 [Caenorhabditis elegans] ref|NP_503444.2| Serpentine Receptor, class SX family member (srsx-8) [Caenorhabditis elegans] 1.0E-158
blast CAE62488 Hypothetical protein CBG06592 [Caenorhabditis briggsae] 1.0E-92
blast CAE62488 Hypothetical protein CBG06592 [Caenorhabditis briggsae] 2.0E-92
blast AAK71414 Serpentine receptor, class sx protein 7 [Caenorhabditis elegans] ref|NP_505036.1| Serpentine Receptor, class SX family member (srsx-7) [Caenorhabditis elegans] 2.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503444.2 7 15-37,50-72,92-111,118-140,164-186,206-228,238-260
F52F10.5 7 46-68,81-103,123-142,149-171,195-217,237-259,269-291
GENEFINDER00000019924 7 15-37,50-72,92-111,118-140,164-186,206-228,238-260
Sequence
Target Sequence 
>C. ELEGANS:185000_AT
attagtagtattcccagtggcccatagaaatactggaaccttgaaatatgtgctgattat
gtcaactataccgtttatctggggcgctgctgtagtgacaatcgggtaccaggctgagga
aaatccaactttacatttatgcaattattttatagctctacagcgccctcttcgaagagt
tttagcaagtgcgacagttatttcaaatacattcagtctggtcgtttttgtgattttgat
ctcaattttttggaaaaaaggaaaaactagcaatgaaagctcaaaaacaatgcgacattt
aaagttctcagctataatatttattatttccaactatttaagcgtttttgtcatcaacgc
atttatactttatggttatgccggtgacgaattaaatggagtcattggaaacatctcaat
tttctcgatgatatcattcactcatacattctatacaataatatggcgatcaaaagatta
tcgaaaacgattttttcgaatgtactgtacagcctacggaccttctgttacaatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTAGTAGTATTCCCAGTGGCCCAT 543 11 417 Antisense
CAACTATACCGTTTATCTGGGGCGC 164 185 479 Antisense
TCTGGGGCGCTGCTGTAGTGACAAT 390 607 494 Antisense
GTGACAATCGGGTACCAGGCTGAGG 389 481 511 Antisense
TATTTTATAGCTCTACAGCGCCCTC 341 661 562 Antisense
ACAGCGCCCTCTTCGAAGAGTTTTA 254 107 576 Antisense
CAGTCTGGTCGTTTTTGTGATTTTG 320 207 630 Antisense
TGTCATCAACGCATTTATACTTTAT 216 559 765 Antisense
GATATCATTCACTCATACATTCTAT 97 427 846 Antisense
GAATGTACTGTACAGCCTACGGACC 667 329 914 Antisense
GCCTACGGACCTTCTGTTACAATGG 69 281 928 Antisense
Sequence Source Affymetrix Proprietary Database