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[184999_at]

Description F26F12.5 /REP_DB=WormBase Gene ID /WP=CE07150 /TR=Q19810 /GB=AAC25892.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_high_8_8 > 13      6grp_highest_nonorm > 92      6grp_total > 77      4grp_total > 10      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 428
1 2 3 4 range
A 88.2
(-2.4)
P 		138.9
(-1.6)
P 		45.4
(-3)
A 		443.8
(3)
P 		398
B 92.7
(-2.7)
P 		89.6
(-2.8)
P 		75.7
(-3)
P 		449.2
(3)
P 		374
C 83.2
(-3)
P 		144
(-2.1)
P 		88
(-2.9)
P 		473.3
(3)
P 		390
avr 88
(-2.7) 		124.2
(-2.2) 		69.7
(-3) 		455.4
(3) 		386

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 427
1 2 3 4 5 6 range
A 245.3
(-1.1)
P 		127.7
(-3)
P 		252.7
(-0.9)
P 		210.7
(-1.6)
P 		316.8
(0.1)
P 		492.9
(3)
P 		365
B 135.7
(-3)
P 		189.6
(-2.2)
P 		141.7
(-2.9)
P 		195.6
(-2.1)
P 		270.7
(-0.9)
P 		530.6
(3)
P 		395
C 148.6
(-2.6)
P 		214.3
(-1.7)
P 		151.2
(-2.6)
P 		212.9
(-1.7)
P 		120.6
(-3)
P 		547.5
(3)
P 		427
avr 176.5
(-3) 		177.2
(-3) 		181.9
(-2.9) 		206.4
(-2.5) 		236
(-2) 		523.7
(3) 		347
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 32.1
(-0.7)
P 		30.2
(-0.9)
P 		11.9
(-3)
A 		65
(3)
P 		53
B 29.6
(-2.1)
P 		22.1
(-2.6)
P 		17.5
(-3)
P 		95.7
(3)
P 		78
C 27.5
(-3)
P 		41.4
(-1.4)
P 		30.7
(-2.6)
P 		79.8
(3)
P 		52
avr 29.7
(-2) 		31.2
(-1.9) 		20
(-3) 		80.2
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 45.2
(-3)
P 		45.4
(-3)
P 		55
(-2.2)
P 		53.4
(-2.3)
P 		95.6
(1)
P 		120
(3)
P 		75
B 47.2
(-2.5)
P 		63.1
(-1.9)
P 		34.4
(-3)
P 		51.8
(-2.4)
P 		110
(-0.2)
P 		197.8
(3)
P 		163
C 55.1
(-2.3)
P 		65.4
(-1.9)
P 		38.5
(-3)
P 		42.8
(-2.8)
P 		39
(-3)
P 		183.3
(3)
P 		145
avr 49.2
(-2.7) 		58
(-2.3) 		42.6
(-3) 		49.3
(-2.7) 		81.5
(-1.1) 		167
(3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184999_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12352
Sequence Type Exemplar sequence
Representative Public ID F26F12.5 NCBI
Target Description F26F12.5 /REP_DB=WormBase Gene ID /WP=CE07150 /TR=Q19810 /GB=AAC25892.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028686(9), NM_001028687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028686 NCBI Caenorhabditis elegans F26F12.5a (F26F12.5) mRNA, complete cds. 9/11 None
NM_001028687 NCBI Caenorhabditis elegans F26F12.5b (F26F12.5) mRNA, complete cds. 11/11 None
SNAP00000007010 ENSEMBL cdna:SNAP chromosome:CEL140:V:5866874:5870515:-1 9/11 None
GENEFINDER00000007017 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5865510:5867743:-1 11/11 None
F26F12.5a ENSEMBL cdna:known chromosome:CEL140:V:5866578:5867743:-1 gene:F26F12.5 9/11 None
F26F12.5b ENSEMBL cdna:known chromosome:CEL140:V:5866874:5867743:-1 gene:F26F12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5866873-5867743(-) 89.05 100.0
Public Domain and Genome References
Ensembl F26F12.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504530 F26F12.4 [Caenorhabditis elegans] gb|AAC25891.1| Hypothetical protein F26F12.4 [Caenorhabditis elegans] 1.0E-65
blast CAE64555 Hypothetical protein CBG09303 [Caenorhabditis briggsae] 3.0E-63
blast NP_001023857 F26F12.5a [Caenorhabditis elegans] gb|AAC25892.2| Hypothetical protein F26F12.5a [Caenorhabditis elegans] 3.0E-50
blast NP_001023858 F26F12.5b [Caenorhabditis elegans] gb|AAQ62457.1| Hypothetical protein F26F12.5b [Caenorhabditis elegans] 4.0E-45
blast NP_001023858 F26F12.5b [Caenorhabditis elegans] gb|AAQ62457.1| Hypothetical protein F26F12.5b [Caenorhabditis elegans] 5.0E-39
blast CAE64556 Hypothetical protein CBG09304 [Caenorhabditis briggsae] 2.0E-27
blast NP_001023858 F26F12.5b [Caenorhabditis elegans] gb|AAQ62457.1| Hypothetical protein F26F12.5b [Caenorhabditis elegans] 2.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023858.1 2 74-96,116-138
F26F12.5b 2 74-96,116-138
SNAP00000007010 3 88-110,180-202,222-244
GENEFINDER00000007017 4 7-26,71-93,114-136,151-173
Sequence
Target Sequence 
>C. ELEGANS:184999_AT
atgacaacctgtttacattgtattcttaaaatgatgtcatttgttttactgatatcattt
gcaagcagtgcagtgatacaatcaaggatacaagaaatcactaatagttcccctgctcca
tctttgaataaagattcttctggtgaaagagtaagaaggcagtatccatatggagttgga
aactatggaaattatggaatgtataatggaatgtacaatgggatgtacaatggaatgtat
ggtggatatggcggatctccttactcatatgctggctatactggctaccaatacccttac
actaatgggatattccctcttcagggtggatactatcctggaagtattgttggttctgga
tcgatttgggctgccggtggaggacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACAACCTGTTTACATTGTATTC 228 45 13 Antisense
GATGTCATTTGTTTTACTGATATCA 542 409 45 Antisense
GAAATCACTAATAGTTCCCCTGCTC 241 363 106 Antisense
CCCCTGCTCCATCTTTGAATAAAGA 386 261 122 Antisense
GTGGATATGGCGGATCTCCTTACTC 33 491 254 Antisense
GATCTCCTTACTCATATGCTGGCTA 156 417 266 Antisense
ATGCTGGCTATACTGGCTACCAATA 70 43 281 Antisense
GCTACCAATACCCTTACACTAATGG 257 265 296 Antisense
GGGATATTCCCTCTTCAGGGTGGAT 332 495 319 Antisense
GTTGGTTCTGGATCGATTTGGGCTG 59 435 361 Antisense
GATTTGGGCTGCCGGTGGAGGACTA 424 427 375 Antisense
Sequence Source Affymetrix Proprietary Database