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[184998_s_at]

Description Y47G7B.2 /REP_DB=WormBase Gene ID /WP=CE19624 /TR=Q9TZD6 /GB=AAC68731.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 32
(-1.4)
A 		9.9
(-2.7)
A 		4.3
(-3)
A 		111.3
(3)
A 		107
B 21.5
(-1.1)
A 		12.6
(-2.5)
A 		9.5
(-3)
A 		47.1
(3)
A 		38
C 55.2
(0.4)
A 		65
(1)
A 		6.4
(-3)
A 		93.4
(3)
A 		87
avr 36.2
(-0.7) 		29.2
(-1.3) 		6.7
(-3) 		83.9
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 10.9
(-2.9)
A 		9.8
(-3)
A 		22.9
(-1.6)
A 		22.6
(-1.7)
A 		60.4
(2.3)
A 		67.2
(3)
A 		57
B 6.9
(-3)
A 		37.6
(-0.6)
A 		67.3
(1.8)
A 		82.7
(3)
A 		39.4
(-0.4)
A 		82
(2.9)
A 		76
C 10.4
(-2.7)
A 		27.5
(-1.2)
A 		7.7
(-3)
A 		72.2
(3)
A 		51.7
(1.1)
A 		69.7
(2.8)
A 		65
avr 9.4
(-3) 		25
(-1.5) 		32.6
(-0.8) 		59.2
(1.7) 		50.5
(0.9) 		73
(3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 11.6
(1.1)
A 		2.2
(-2.6)
A 		1.1
(-3)
A 		16.3
(3)
A 		15
B 6.9
(0.6)
A 		3.1
(-2.3)
A 		2.2
(-3)
A 		10
(3)
A 		8
C 18.3
(2.9)
A 		18.7
(3)
A 		2.2
(-3)
A 		15.7
(1.9)
A 		17
avr 12.3
(2.2) 		8
(0) 		1.8
(-3) 		14
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 2
(-3)
A 		3.5
(-2.4)
A 		5
(-1.9)
A 		5.7
(-1.6)
A 		18.2
(3)
A 		16.4
(2.3)
A 		16
B 2.4
(-3)
A 		12.5
(-0.9)
A 		16.3
(-0)
A 		21.9
(1.1)
A 		16
(-0.1)
A 		30.6
(3)
A 		28
C 3.9
(-2.5)
A 		8.4
(-1.2)
A 		2
(-3)
A 		14.5
(0.5)
A 		16.7
(1.1)
A 		23.3
(3)
A 		21
avr 2.8
(-3) 		8.1
(-1.5) 		7.8
(-1.5) 		14
(0.3) 		17
(1.1) 		23.4
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184998_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5313
Sequence Type Exemplar sequence
Representative Public ID Y47G7B.2 NCBI
Target Description Y47G7B.2 /REP_DB=WormBase Gene ID /WP=CE19624 /TR=Q9TZD6 /GB=AAC68731.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061938(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061938 NCBI Caenorhabditis elegans Y47G7B.2 (Y47G7B.2) mRNA, complete cds. 11/11 None
SNAP00000016797 ENSEMBL cdna:SNAP chromosome:CEL140:II:2706170:2707938:-1 11/11 None
Y47G7B.2 ENSEMBL cdna:known chromosome:CEL140:II:2705996:2707982:-1 gene:Y47G7B.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074843 1/11 Cross Hyb Matching Probes A 
Y102A5A.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2706168-2707937(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47G7B.2
Entrez Gene 173614 Entrez gene
SwissProt Q9TZD6 EMBL-EBI
WormBase CE19624 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68731 Hypothetical protein Y47G7B.2 [Caenorhabditis elegans] ref|NP_494339.1| Y47G7B.2 [Caenorhabditis elegans] 0.0
blast CAE59752 Hypothetical protein CBG03198 [Caenorhabditis briggsae] 1.0E-58
blast AAK84577 Hypothetical protein T24E12.5 [Caenorhabditis elegans] ref|NP_494641.2| T24E12.5 [Caenorhabditis elegans] 8.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494339.1 1 64-86
Y47G7B.2 1 64-86
SNAP00000016797 1 64-86
Sequence
Target Sequence 
>C. ELEGANS:184998_S_AT
gcatcgtggctccggagaatttctcgtatacgatggttgccctggcgaacaatacacgtg
aaggacttctccattcattgattagacatggtcatgagttcaaatttggtgaagatcttc
tggatgcgcttccgggaaatctgaaacaactggtgcaacagctcagaaaggagaacaacc
gcgatctgaatattgtgctagagaaggagattcagaaattgtccgaatcggagtatcgag
atctgctcaagctcttggaaaagttccaaacctatatccagcaaatcgttcaacgcggaa
attacattggtgaacgtgtgaacatcaacggccagatgcaggtttactggaaaatcaacg
ataaggaagtcctggtgacggctctttctgagcagttgtactgtggaaatgtgcagtatg
acgctggaggaagggctcgaccaattcggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCGTGGCTCCGGAGAATTTCTC 623 309 743 Antisense
TCTCGTATACGATGGTTGCCCTGGC 619 609 764 Antisense
TTGCCCTGGCGAACAATACACGTGA 638 701 779 Antisense
GTGAAGGACTTCTCCATTCATTGAT 241 481 800 Antisense
TCTTCTGGATGCGCTTCCGGGAAAT 36 615 858 Antisense
ATCGAGATCTGCTCAAGCTCTTGGA 626 35 977 Antisense
AAAGTTCCAAACCTATATCCAGCAA 51 123 1002 Antisense
ATCAACGGCCAGATGCAGGTTTACT 310 25 1066 Antisense
AAGGAAGTCCTGGTGACGGCTCTTT 544 157 1105 Antisense
GACGGCTCTTTCTGAGCAGTTGTAC 100 377 1119 Antisense
GAGGAAGGGCTCGACCAATTCGGAA 393 405 1169 Antisense
Sequence Source Affymetrix Proprietary Database