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[184996_at]

Description F41C3.11 /REP_DB=WormBase Gene ID /WP=CE02729 /TR=Q20261 /GB=AAC46816.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 63      6grp_total > 70      4grp_total > 49      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 324
1 2 3 4 range
A 124.5
(-3)
P 		342
(2.2)
P 		374.1
(3)
P 		216.3
(-0.8)
P 		250
B 148.3
(-3)
P 		408.3
(2.9)
P 		413.8
(3)
P 		160.8
(-2.7)
P 		266
C 157.8
(-1.4)
P 		321.4
(2.5)
P 		340.9
(3)
P 		90
(-3)
P 		251
avr 143.5
(-3) 		357.2
(2.5) 		376.3
(3) 		155.7
(-2.7) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1144
1 2 3 4 5 6 range
A 240.4
(-2.5)
P 		324.2
(-2)
P 		710.3
(0.3)
P 		1169.1
(3)
P 		442.6
(-1.3)
P 		163.7
(-3)
P 		1005
B 233.5
(-2.3)
P 		292.5
(-1.9)
P 		740.8
(1.2)
P 		1007.5
(3)
P 		508.3
(-0.4)
P 		126.1
(-3)
P 		881
C 232.1
(-2.7)
P 		401.9
(-1.8)
P 		765.1
(0.2)
P 		1270.3
(3)
P 		302.7
(-2.3)
P 		174
(-3)
P 		1096
avr 235.3
(-2.5) 		339.5
(-1.9) 		738.7
(0.5) 		1149
(3) 		417.9
(-1.4) 		154.6
(-3) 		994
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 45.3
(-1.8)
P 		74.2
(0.9)
P 		97.8
(3)
P 		31.7
(-3)
P 		66
B 47.3
(-1.8)
P 		100.8
(3)
P 		95.9
(2.6)
P 		34.3
(-3)
P 		67
C 52.2
(-0.9)
P 		92.4
(1.5)
P 		118.8
(3)
P 		15.2
(-3)
P 		104
avr 48.3
(-1.4) 		89.1
(1.8) 		104.2
(3) 		27.1
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 44.3
(-2.9)
P 		115.3
(-1.2)
P 		154.7
(-0.3)
P 		296.5
(3)
P 		133.6
(-0.8)
P 		39.9
(-3)
P 		257
B 81.3
(-2.1)
P 		97.4
(-1.6)
P 		179.9
(0.6)
P 		266.8
(3)
P 		206.5
(1.4)
P 		47
(-3)
P 		220
C 86
(-2.2)
P 		122.6
(-1)
P 		194.7
(1.2)
P 		255.5
(3)
P 		97.9
(-1.8)
P 		58.2
(-3)
P 		197
avr 70.5
(-2.4) 		111.8
(-1.3) 		176.4
(0.4) 		272.9
(3) 		146
(-0.4) 		48.4
(-3) 		225
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184996_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5604
Sequence Type Exemplar sequence
Representative Public ID F41C3.11 NCBI
Target Description F41C3.11 /REP_DB=WormBase Gene ID /WP=CE02729 /TR=Q20261 /GB=AAC46816.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062443(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062443 NCBI Caenorhabditis elegans F41C3.11 (F41C3.11) mRNA, complete cds. 9/11 None
SNAP00000035618 ENSEMBL cdna:SNAP chromosome:CEL140:II:4731505:4733883:-1 9/11 None
GENEFINDER00000035635 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4731680:4733911:-1 9/11 None
F41C3.11 ENSEMBL cdna:known chromosome:CEL140:II:4731186:4733929:-1 gene:F41C3.11 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4731503-4733882(-) 91.92 100.0
Public Domain and Genome References
Gene Title
Ensembl F41C3.11
Entrez Gene 173816 Entrez gene
SwissProt Q20261 EMBL-EBI
WormBase CE37372 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46816 Hypothetical protein F41C3.11 [Caenorhabditis elegans] ref|NP_494844.3| F41C3.11 [Caenorhabditis elegans] 0.0
blast AAC46816 Hypothetical protein F41C3.11 [Caenorhabditis elegans] ref|NP_494844.3| F41C3.11 [Caenorhabditis elegans] 1.0E-168
blast AAC46816 Hypothetical protein F41C3.11 [Caenorhabditis elegans] ref|NP_494844.3| F41C3.11 [Caenorhabditis elegans] 1.0E-161
blast CAE60635 Hypothetical protein CBG04279 [Caenorhabditis briggsae] 1.0E-134
blast CAE60635 Hypothetical protein CBG04279 [Caenorhabditis briggsae] 1.0E-123
blast CAE60635 Hypothetical protein CBG04279 [Caenorhabditis briggsae] 1.0E-121
blast CAE66279 Hypothetical protein CBG11524 [Caenorhabditis briggsae] 4.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 7.4E-7
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 7.4E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494844.3 1 7-29
F41C3.11 1 7-29
GENEFINDER00000035635 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:184996_AT
aatactggattcccgaatgttcacaatcggacccttattgtcagtatggactcatcaacg
tgtgctgctataaaatcgcaatgggacgaaactataaaatgcgtatctttaaacattgat
acttacaaaactggttacgagtggggaaaacaagaatatatcaatattctgactctccgt
gctaatttgatggatcttttggcaacgaataatattccatttgttcttattgaagccgat
gcgacgtggttcaaagatccactggaattatttgcaaaccgaacgaatacagaagaagat
tttgatataatagttccagtgaaaggttatgacggaggaagttgggatacgatggctttt
gatccaatgttggttggaagtacgaatggatcaaaaatgtttataaaggagatgaaggaa
agattgaatgccgatcagaagttgtatgatcaggacgtaatgaatcagttatgtgcatca
caacacaacggcctagtctgtcgacagttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACTGGATTCCCGAATGTTCACA 273 173 652 Antisense
CGAATGTTCACAATCGGACCCTTAT 452 243 665 Antisense
GGACCCTTATTGTCAGTATGGACTC 430 523 680 Antisense
TATGGACTCATCAACGTGTGCTGCT 587 655 696 Antisense
TATCAATATTCTGACTCTCCGTGCT 512 659 810 Antisense
TCTGACTCTCCGTGCTAATTTGATG 37 609 819 Antisense
GAAGCCGATGCGACGTGGTTCAAAG 307 345 883 Antisense
GATCCACTGGAATTATTTGCAAACC 366 415 907 Antisense
GATACGATGGCTTTTGATCCAATGT 588 423 997 Antisense
ATGTGCATCACAACACAACGGCCTA 663 49 1122 Antisense
CAACGGCCTAGTCTGTCGACAGTTT 587 185 1137 Antisense
Sequence Source Affymetrix Proprietary Database