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[184995_s_at]

Description C04E6.11 /REP_DB=WormBase Gene ID /WP=CE07916 /TR=O01470 /GB=AAK39142.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 44      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 72      6grp_total > 20      4grp_total > 61      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 403
1 2 3 4 range
A 471.4
(3)
P 		406.8
(1.4)
P 		427.1
(1.9)
P 		229.9
(-3)
P 		242
B 505.2
(3)
P 		498.7
(2.9)
P 		493.2
(2.8)
P 		183.1
(-3)
P 		322
C 586.4
(3)
P 		422.4
(-0.2)
P 		507.4
(1.5)
P 		274.8
(-3)
P 		312
avr 521
(3) 		442.6
(1.4) 		475.9
(2.1) 		229.3
(-3) 		292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 437.9
(2)
P 		454.6
(3)
P 		450.4
(2.8)
P 		356.5
(-2.7)
P 		383.4
(-1.1)
P 		351.4
(-3)
P 		103
B 407.1
(-1.5)
P 		545.5
(3)
P 		391.6
(-2)
P 		462
(0.3)
P 		359.2
(-3)
P 		403
(-1.6)
P 		186
C 359.1
(-0.7)
P 		428.8
(1.8)
P 		460.9
(3)
P 		420.4
(1.5)
P 		297.5
(-3)
P 		400.9
(0.8)
P 		163
avr 401.4
(-0.5) 		476.3
(3) 		434.3
(1.1) 		413
(0.1) 		346.7
(-3) 		385.1
(-1.2) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 171.6
(3)
P 		88.3
(-0.6)
P 		111.6
(0.4)
P 		33.7
(-3)
P 		138
B 161.1
(3)
P 		123.2
(1.1)
P 		114.3
(0.7)
P 		39
(-3)
P 		122
C 194.1
(3)
P 		121.5
(0.1)
P 		176.8
(2.3)
P 		46.3
(-3)
P 		148
avr 175.6
(3) 		111
(0.1) 		134.2
(1.2) 		39.7
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 80.7
(-3)
P 		161.7
(3)
P 		98.1
(-1.7)
P 		90.4
(-2.3)
P 		115.7
(-0.4)
P 		85.5
(-2.6)
P 		81
B 141.6
(0.2)
P 		181.6
(3)
P 		95.1
(-3)
P 		122.4
(-1.1)
P 		146
(0.5)
P 		150.3
(0.8)
P 		87
C 133.1
(2.9)
P 		130.9
(2.6)
P 		117.3
(1)
P 		84.5
(-3)
P 		96.3
(-1.6)
P 		134.2
(3)
P 		50
avr 118.5
(-1) 		158.1
(3) 		103.5
(-2.6) 		99.1
(-3) 		119.3
(-0.9) 		123.3
(-0.5) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184995_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12234
Sequence Type Exemplar sequence
Representative Public ID C04E6.11 NCBI
Target Description C04E6.11 /REP_DB=WormBase Gene ID /WP=CE07916 /TR=O01470 /GB=AAK39142.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072139(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072139 NCBI Caenorhabditis elegans C04E6.11 (C04E6.11) mRNA, complete cds. 11/11 None
SNAP00000001269 ENSEMBL cdna:SNAP chromosome:CEL140:V:5916821:5920332:-1 11/11 None
GENEFINDER00000001277 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5916821:5922347:-1 11/11 None
C04E6.11 ENSEMBL cdna:known chromosome:CEL140:V:5916701:5920442:-1 gene:C04E6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5916820-5920404(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04E6.11
Entrez Gene 178978 Entrez gene
SwissProt O01470 EMBL-EBI
WormBase CE36911 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39142 Hypothetical protein C04E6.11 [Caenorhabditis elegans] ref|NP_504540.2| C04E6.11 [Caenorhabditis elegans] 0.0
blast CAE64546 Hypothetical protein CBG09291 [Caenorhabditis briggsae] 0.0
blast AAK39143 Hypothetical protein C04E6.12 [Caenorhabditis elegans] ref|NP_504541.1| C04E6.12 [Caenorhabditis elegans] 2.0E-85
Sequence
Target Sequence 
>C. ELEGANS:184995_S_AT
gtttctgtcaagtcttcattgtcccaatggtactgtcgctttattacgacattgcttgca
acagaatacagatgaagctcgaatgaatttacagtttgttcttcatcgtggctcaacctt
cctgtcacaatctcgaatgagtgcaatgcacttcgctgtgctaattagtatgaggaaatt
tgaagacgctgaaaaattctgtgatcaattatcccacaaagttgatcccaatgattgctt
gatggcgatgagattgatgaattcactgaaagctcgatctgttgatgatcaattcatgct
cgactttgctgctttatgtcttcgaaaactaggactatcagataataaagaagtcgcaca
gagcatgcaagcggatctacttagaatatgcgacactcgccatatggggccaacagctct
cagagtctatgatttattttccgaatatggtgtcgagttgcgagaagaagagaagaatcg
gctggcggcagtgattgaaaaacattcaacactttcaaaaaagtggatcttcaaaccaaa
cggatttctgaacatcgctgccgacgacgatatcatcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCTGTCAAGTCTTCATTGTCCC 344 451 2376 Antisense
ATTGTCCCAATGGTACTGTCGCTTT 566 3 2393 Antisense
TTACAGTTTGTTCTTCATCGTGGCT 384 681 2464 Antisense
ACCTTCCTGTCACAATCTCGAATGA 319 87 2491 Antisense
GAGTGCAATGCACTTCGCTGTGCTA 525 401 2514 Antisense
ATCAATTCATGCTCGACTTTGCTGC 188 27 2663 Antisense
ACTTTGCTGCTTTATGTCTTCGAAA 199 103 2678 Antisense
TATGCGACACTCGCCATATGGGGCC 562 655 2762 Antisense
GGGCCAACAGCTCTCAGAGTCTATG 447 491 2782 Antisense
ACGGATTTCTGAACATCGCTGCCGA 125 97 2915 Antisense
TCGCTGCCGACGACGATATCATCAC 109 601 2930 Antisense
Sequence Source Affymetrix Proprietary Database