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[184993_at]

Description H02F09.3 /REP_DB=WormBase Gene ID /WP=CE19479 /TR=O76602 /GB=AAC64622.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 04      4grp_high_8_8 > 49      6grp_total > 24      4grp_total > 53      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 346.1
(3)
P 		286.3
(1.5)
P 		248
(0.5)
P 		108.7
(-3)
A 		237
B 315.8
(3)
P 		187.7
(-0.8)
P 		233.7
(0.6)
P 		114.1
(-3)
P 		202
C 338.9
(3)
P 		233.1
(0.2)
P 		215.5
(-0.3)
P 		112.6
(-3)
P 		226
avr 333.6
(3) 		235.7
(0.4) 		232.4
(0.3) 		111.8
(-3) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 235.1
(1.4)
P 		284.3
(3)
P 		166.1
(-0.8)
P 		132.8
(-1.9)
P 		146.3
(-1.4)
P 		98
(-3)
M 		186
B 275
(3)
P 		230.6
(1.5)
P 		180.3
(-0.1)
P 		178.4
(-0.2)
P 		117.4
(-2.2)
P 		92.5
(-3)
P 		183
C 243
(1.8)
P 		283.3
(3)
P 		193.4
(0.3)
P 		80.1
(-3)
P 		115.2
(-2)
P 		80.7
(-3)
P 		203
avr 251
(2.5) 		266.1
(3) 		179.9
(0.1) 		130.4
(-1.6) 		126.3
(-1.8) 		90.4
(-3) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 126
(3)
P 		62.2
(-0.5)
P 		64.8
(-0.3)
P 		15.9
(-3)
A 		110
B 100.7
(3)
P 		46.3
(-1.3)
P 		54.2
(-0.7)
P 		24.3
(-3)
P 		76
C 112.2
(3)
P 		67
(0.1)
P 		75.1
(0.6)
P 		19
(-3)
P 		93
avr 113
(3) 		58.5
(-0.5) 		64.7
(-0.1) 		19.7
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 43.3
(-1.5)
P 		101.1
(3)
P 		36.2
(-2)
P 		33.7
(-2.2)
P 		44.1
(-1.4)
P 		23.8
(-3)
M 		77
B 95.7
(3)
P 		76.8
(1.1)
P 		43.8
(-2.1)
P 		47.2
(-1.8)
P 		47.7
(-1.7)
P 		34.5
(-3)
P 		61
C 90.1
(3)
P 		86.4
(2.7)
P 		49.2
(-0.3)
P 		16.1
(-3)
P 		37.3
(-1.3)
P 		27
(-2.1)
P 		74
avr 76.4
(1.8) 		88.1
(3) 		43.1
(-1.5) 		32.3
(-2.6) 		43
(-1.5) 		28.4
(-3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184993_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18438
Sequence Type Exemplar sequence
Representative Public ID H02F09.3 NCBI
Target Description H02F09.3 /REP_DB=WormBase Gene ID /WP=CE19479 /TR=O76602 /GB=AAC64622.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075894(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075894 NCBI Caenorhabditis elegans H02F09.3 (H02F09.3) mRNA, complete cds. 11/11 None
H02F09.3 ENSEMBL cdna:known chromosome:CEL140:X:1568673:1572849:1 gene:H02F09.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039865 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1568672-1572849(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H02F09.3
Entrez Gene 186667 Entrez gene
SwissProt O76602 EMBL-EBI
WormBase CE19479 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC64622 Hypothetical protein H02F09.3 [Caenorhabditis elegans] ref|NP_508295.1| H02F09.3 [Caenorhabditis elegans] 1.0E-120
blast AAC70889 Hypothetical protein K06A9.1a [Caenorhabditis elegans] ref|NP_508293.1| K06A9.1a [Caenorhabditis elegans] 1.0E-61
blast AAC70890 Hypothetical protein K06A9.1b [Caenorhabditis elegans] ref|NP_508292.1| K06A9.1b [Caenorhabditis elegans] 1.0E-61
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508295.1 1 12-34
H02F09.3 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:184993_AT
aggatcgaccgtatctactgtcagcggaagtacgggatccaccatcactggagaatcaac
cgtttctggctcgacagaatctaccgttactgcggaatctacagtttcaggatcatccgt
gtcaactgtgagtggcaacacaggatcaaccatcactggagaatcaaccgtatctgggtc
gacgggatcgactggagaatccacaattttagaatcatccgtctcaactgtaagtgtcag
cacaggatctaccataacagatggatcaactgcatctagatcttcagtatcaaccgtcag
tgctagcacagaatcgacggtttccgggggatccagcgcctcgataggatcgacaaacac
ccctgatagcacggaatccacaatttctggatcaacgatcagtggcagcactggatcaac
ggagtcatcaacaatgagcgcaggaacaggcagcactgaaacttcaacatcaggaggatc
aacagtgtcaggatcatctctatccacgtctagcacagaatcatcggggtcatcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGATCGACCGTATCTACTGTCAGC 318 55 3237 Antisense
TACGGGATCCACCATCACTGGAGAA 590 645 3267 Antisense
TGGAGAATCAACCGTTTCTGGCTCG 53 549 3285 Antisense
CTGGCTCGACAGAATCTACCGTTAC 160 241 3302 Antisense
GGATCATCCGTGTCAACTGTGAGTG 138 511 3346 Antisense
GAATCATCCGTCTCAACTGTAAGTG 291 327 3448 Antisense
CAGTATCAACCGTCAGTGCTAGCAC 539 207 3521 Antisense
GGGATCCAGCGCCTCGATAGGATCG 589 493 3564 Antisense
ATAGGATCGACAAACACCCCTGATA 551 21 3580 Antisense
TCTCTATCCACGTCTAGCACAGAAT 224 613 3733 Antisense
GCACAGAATCATCGGGGTCATCATC 418 317 3749 Antisense
Sequence Source Affymetrix Proprietary Database