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[184992_at]

Description C33E10.1 /REP_DB=WormBase Gene ID /WP=CE17490 /TR=O61801 /GB=AAC16976.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 11      6grp_total > 58      4grp_total > 21      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 87.8
(-0.1)
P 		34
(-2.6)
P 		26.3
(-3)
A 		151.5
(3)
P 		125
B 69.6
(0)
P 		73.1
(0.3)
P 		34.8
(-3)
A 		103.4
(3)
P 		69
C 112.2
(2.8)
P 		62
(-1.1)
M 		36.8
(-3)
P 		114.4
(3)
P 		78
avr 89.9
(0.8) 		56.4
(-1.4) 		32.6
(-3) 		123.1
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 83.3
(2.9)
P 		29.9
(-3)
A 		63.9
(0.7)
P 		45.7
(-1.3)
M 		58.9
(0.2)
P 		84.5
(3)
P 		55
B 76.6
(2.5)
P 		39.7
(-2.7)
P 		55.8
(-0.4)
P 		48.3
(-1.5)
A 		37.3
(-3)
P 		80
(3)
P 		43
C 84.5
(2.3)
P 		75.5
(1.3)
P 		39
(-2.9)
A 		62.8
(-0.2)
A 		37.8
(-3)
P 		90.9
(3)
P 		53
avr 81.5
(2.5) 		48.4
(-2.5) 		52.9
(-1.8) 		52.3
(-1.9) 		44.7
(-3) 		85.1
(3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 32
(3)
P 		7.4
(-2.9)
P 		6.9
(-3)
A 		22.2
(0.7)
P 		25
B 22.2
(3)
P 		18
(1.2)
P 		8.1
(-3)
A 		22
(2.9)
P 		14
C 37.1
(3)
P 		17.8
(-1.8)
M 		12.8
(-3)
P 		19.3
(-1.4)
P 		24
avr 30.4
(3) 		14.4
(-1.5) 		9.3
(-3) 		21.2
(0.4) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 15.4
(-0.1)
P 		10.6
(-3)
A 		13.9
(-1)
P 		11.6
(-2.4)
M 		17.8
(1.3)
P 		20.6
(3)
P 		10
B 26.6
(1.9)
P 		13.2
(-2.9)
P 		13.6
(-2.7)
P 		12.8
(-3)
A 		15.2
(-2.2)
P 		29.8
(3)
P 		17
C 31.3
(3)
P 		23
(0.7)
P 		9.9
(-3)
A 		12.6
(-2.2)
A 		12.2
(-2.4)
P 		30.4
(2.7)
P 		21
avr 24.4
(2) 		15.6
(-1.6) 		12.5
(-2.9) 		12.3
(-3) 		15.1
(-1.8) 		26.9
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184992_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17648
Sequence Type Exemplar sequence
Representative Public ID C33E10.1 NCBI
Target Description C33E10.1 /REP_DB=WormBase Gene ID /WP=CE17490 /TR=O61801 /GB=AAC16976.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078407(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078407 NCBI Caenorhabditis elegans C33E10.1 (C33E10.1) mRNA, complete cds. 11/11 None
SNAP00000003543 ENSEMBL cdna:SNAP chromosome:CEL140:X:17305612:17306244:1 9/11 None
C33E10.3 ENSEMBL cdna:pseudogene chromosome:CEL140:X:17284250:17285360:1 gene:C33E10.3 9/11 None
C33E10.1 ENSEMBL cdna:known chromosome:CEL140:X:17305258:17306218:1 gene:C33E10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003535 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17305340-17306244(+) 100.0 100.0
chrX:17284249-17285367(+) 94.97 94.97
Public Domain and Genome References
Gene Title
Ensembl C33E10.3
C33E10.1
Entrez Gene 181763 Entrez gene
SwissProt O61801 EMBL-EBI
WormBase CE34265 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81436 Hypothetical protein F40F4.1 [Caenorhabditis elegans] ref|NP_508559.1| F40F4.1 [Caenorhabditis elegans] 9.0E-55
blast AAF39903 Hypothetical protein H24O09.2 [Caenorhabditis elegans] ref|NP_503305.1| H24O09.2 [Caenorhabditis elegans] 9.0E-49
blast AAC16976 Hypothetical protein C33E10.1 [Caenorhabditis elegans] ref|NP_510808.2| C33E10.1 [Caenorhabditis elegans] 2.0E-35
blast AAA81436 Hypothetical protein F40F4.1 [Caenorhabditis elegans] ref|NP_508559.1| F40F4.1 [Caenorhabditis elegans] 2.0E-22
blast CAB05033 Hypothetical protein ZK909.5 [Caenorhabditis elegans] ref|NP_493609.1| ZK909.5 [Caenorhabditis elegans] 2.0E-16
blast AAF39903 Hypothetical protein H24O09.2 [Caenorhabditis elegans] ref|NP_503305.1| H24O09.2 [Caenorhabditis elegans] 1.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-8
Sequence
Target Sequence 
>C. ELEGANS:184992_AT
aagtctttgcatcgatttgtctttttggttatagtggacattgatgattctgtggaaatt
aaaattaaacccacccaacgccatgaacatttgaaaatcgaaggttcaacaactggtaga
gtgatttgtatgagcattccgagcatgggaatacgaaagtatgttgatcacctactggat
gttttaaatcgggcaaaactcgacgaattcactataaccagagacaactattgcactcaa
tcgatttgcgacgagttcaaggatctcgacatttgttgctttatgaatcccggaaaaatg
tcagactcgttgtttcatcagaagattatgagacagattgcaagtaaaagcgacaggatt
gatctcagtactccagtatttgaatccaaaactcacacaactcaagagttcttggttcaa
aacttcgatgtcttacgagtgatgtatttttatgagtacaatcttaatgatattctctcc
acaaacagcattgtagtttttggggaagttgttattggcataaatcagttcaacttgttt
gtcagacattggatcaacggatccaatccaaagctcgagtact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCTTTGCATCGATTTGTCTTTT 689 157 124 Antisense
CCACCCAACGCCATGAACATTTGAA 651 273 194 Antisense
AACTCGACGAATTCACTATAACCAG 322 141 320 Antisense
GGATCTCGACATTTGTTGCTTTATG 704 511 384 Antisense
TGTCAGACTCGTTGTTTCATCAGAA 382 557 422 Antisense
GATTGATCTCAGTACTCCAGTATTT 103 435 480 Antisense
GAATCCAAAACTCACACAACTCAAG 476 329 505 Antisense
TTGGTTCAAAACTTCGATGTCTTAC 656 695 535 Antisense
GATATTCTCTCCACAAACAGCATTG 433 427 592 Antisense
ATCAGTTCAACTTGTTTGTCAGACA 533 27 647 Antisense
GGATCCAATCCAAAGCTCGAGTACT 296 513 682 Antisense
Sequence Source Affymetrix Proprietary Database