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[184991_s_at]

Description Y45F10A.8 /REP_DB=WormBase Gene ID /WP=CE18399 /TR=O62457 /GB=CAA16364.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 05      6grp_total > 69      4grp_total > 05      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 108.9
(-1.1)
P 		73.3
(-3)
A 		110.9
(-1)
P 		184.1
(3)
P 		111
B 113.6
(-0.4)
P 		36.4
(-3)
A 		78.6
(-1.6)
A 		216.3
(3)
P 		180
C 108.9
(-1.1)
P 		89.8
(-2.1)
P 		73.6
(-3)
P 		186.6
(3)
P 		113
avr 110.5
(-1) 		66.5
(-3) 		87.7
(-2) 		195.7
(3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 71.8
(-1.4)
A 		63.7
(-3)
P 		93.7
(3)
P 		76.6
(-0.4)
A 		76.5
(-0.4)
A 		76.4
(-0.5)
P 		30
B 87.3
(0.3)
P 		74.4
(-0.4)
P 		32.7
(-2.6)
P 		24.7
(-3)
A 		89.2
(0.4)
P 		139.6
(3)
P 		115
C 86.8
(-1)
P 		68.7
(-1.9)
P 		75.5
(-1.6)
P 		48.1
(-3)
A 		67.1
(-2)
P 		163.4
(3)
P 		115
avr 82
(-0.5) 		68.9
(-1.5) 		67.3
(-1.6) 		49.8
(-3) 		77.6
(-0.8) 		126.5
(3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 39.6
(3)
P 		15.9
(-3)
A 		29
(0.3)
P 		27
(-0.2)
P 		24
B 36.2
(1.4)
P 		9
(-3)
A 		18.2
(-1.5)
A 		46.1
(3)
P 		37
C 36
(3)
P 		25.8
(-2.9)
P 		25.6
(-3)
P 		31.5
(0.4)
P 		10
avr 37.3
(3) 		16.9
(-3) 		24.3
(-0.8) 		34.9
(2.3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 13.2
(-3)
A 		22.7
(2.8)
P 		20.4
(1.4)
P 		19.4
(0.8)
A 		23.1
(3)
A 		18.6
(0.3)
P 		10
B 30.4
(0.1)
P 		24.8
(-0.6)
P 		7.9
(-2.8)
P 		6.6
(-3)
A 		36.2
(0.9)
P 		52
(3)
P 		45
C 32.2
(0)
P 		21
(-1.5)
P 		19.2
(-1.7)
P 		9.7
(-3)
A 		21.7
(-1.4)
P 		54.7
(3)
P 		45
avr 25.3
(-0.3) 		22.8
(-0.8) 		15.8
(-2.2) 		11.9
(-3) 		27
(0) 		41.8
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184991_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10045
Sequence Type Exemplar sequence
Representative Public ID Y45F10A.8 NCBI
Target Description Y45F10A.8 /REP_DB=WormBase Gene ID /WP=CE18399 /TR=O62457 /GB=CAA16364.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070200(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070200 NCBI Caenorhabditis elegans Y45F10A.7 (Y45F10A.7) mRNA, complete cds. 11/11 None
SNAP00000021289 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13494742:13499672:1 11/11 None
GENEFINDER00000021295 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13492540:13497035:1 11/11 None
Y45F10A.7 ENSEMBL cdna:known chromosome:CEL140:IV:13492540:13497098:1 gene:Y45F10A.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13495013-13497041(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45F10A.7
Entrez Gene 178318 Entrez gene
SwissProt O62456 EMBL-EBI
WormBase CE35664 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258754_AT glutaredoxin-related at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16363 Hypothetical protein Y45F10A.7 [Caenorhabditis elegans] ref|NP_502601.2| Y45F10A.7 [Caenorhabditis elegans] 0.0
blast CAE58595 Hypothetical protein CBG01762 [Caenorhabditis briggsae] 0.0
blast CAE58595 Hypothetical protein CBG01762 [Caenorhabditis briggsae] 1.0E-169
blast CAE58595 Hypothetical protein CBG01762 [Caenorhabditis briggsae] 1.0E-167
blast T26907 hypothetical protein Y45F10A.8 - Caenorhabditis elegans 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR006869 EMBL-EBI Protein of unknown function DUF547 7.9E-23
Pfam IPR000591 EMBL-EBI Pleckstrin putative G-protein interacting domain 5.9E-8
Pfam IPR006869 EMBL-EBI Protein of unknown function DUF547 7.9E-23
Pfam IPR006869 EMBL-EBI Protein of unknown function DUF547 7.9E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000021295 1 177-199
Sequence
Target Sequence 
>C. ELEGANS:184991_S_AT
gtgatccacttgggaaaaacgttcaaatggttttccgacgatttcggtggatcaaccgag
aagatcctccaatggattctagacgtgttggatacgaatgaaagtgacaaaaaacacaat
ttacaaaaacttttcttcacgggagagtattctatcgagtatattccatatgattggtcg
acgaatgggcgaatggatgagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATCCACTTGGGAAAAACGTTCA 643 483 664 Antisense
TCAAATGGTTTTCCGACGATTTCGG 524 607 686 Antisense
TCCGACGATTTCGGTGGATCAACCG 15 595 697 Antisense
ATCAACCGAGAAGATCCTCCAATGG 266 25 714 Antisense
TCCTCCAATGGATTCTAGACGTGTT 358 593 728 Antisense
GGATTCTAGACGTGTTGGATACGAA 25 509 737 Antisense
ACTTTTCTTCACGGGAGAGTATTCT 32 103 792 Antisense
GGGAGAGTATTCTATCGAGTATATT 537 495 804 Antisense
GAGTATATTCCATATGATTGGTCGA 266 399 820 Antisense
GATTGGTCGACGAATGGGCGAATGG 55 435 835 Antisense
GACGAATGGGCGAATGGATGAGAAG 402 377 843 Antisense
Sequence Source Affymetrix Proprietary Database