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[184990_at]

Description Y45F10A.8 /REP_DB=WormBase Gene ID /WP=CE18399 /TR=O62457 /GB=CAA16364.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 58      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 82      6grp_total > 59      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 347.6
(-0.5)
P 		281.4
(-3)
P 		350.8
(-0.4)
P 		443.2
(3)
P 		162
B 378.1
(-1.6)
P 		355.9
(-2.6)
P 		346.6
(-3)
P 		477.7
(3)
P 		131
C 371
(1.5)
P 		365.6
(0.6)
P 		342.9
(-3)
P 		380.4
(3)
P 		38
avr 365.6
(-1.1) 		334.3
(-3) 		346.8
(-2.2) 		433.8
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 336.9
(-0.6)
P 		344.3
(-0.3)
P 		288.6
(-2.4)
P 		271.9
(-3)
P 		320.6
(-1.2)
P 		432.6
(3)
P 		161
B 408.5
(2.3)
P 		278
(-3)
P 		314.9
(-1.5)
P 		309.7
(-1.7)
P 		359.1
(0.3)
P 		426.6
(3)
P 		149
C 401.3
(2.9)
P 		268.7
(-1.2)
P 		358.6
(1.6)
P 		211.2
(-3)
P 		352
(1.4)
P 		404
(3)
P 		193
avr 382.2
(1.5) 		297
(-1.7) 		320.7
(-0.8) 		264.3
(-3) 		343.9
(0) 		421.1
(3) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 126.6
(3)
P 		61.1
(-3)
P 		91.7
(-0.2)
P 		64.9
(-2.7)
P 		66
B 120.6
(3)
P 		87.9
(-1.9)
P 		80.3
(-3)
P 		101.8
(0.2)
P 		40
C 122.8
(3)
P 		105.1
(1.2)
P 		119.5
(2.7)
P 		64.1
(-3)
P 		59
avr 123.3
(3) 		84.7
(-2) 		97.2
(-0.4) 		76.9
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 62.1
(-3)
P 		122.4
(3)
P 		62.9
(-2.9)
P 		69
(-2.3)
P 		96.7
(0.4)
P 		105.3
(1.3)
P 		60
B 142.1
(1.8)
P 		92.5
(-1.8)
P 		76.5
(-3)
P 		82
(-2.6)
P 		145.9
(2)
P 		159.1
(3)
P 		83
C 148.7
(3)
P 		82
(-0.8)
P 		91.3
(-0.2)
P 		42.5
(-3)
P 		113.9
(1)
P 		135.2
(2.2)
P 		106
avr 117.6
(1.6) 		99
(0) 		76.9
(-1.9) 		64.5
(-3) 		118.8
(1.7) 		133.2
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184990_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10045
Sequence Type Exemplar sequence
Representative Public ID Y45F10A.8 NCBI
Target Description Y45F10A.8 /REP_DB=WormBase Gene ID /WP=CE18399 /TR=O62457 /GB=CAA16364.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070200(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070200 NCBI Caenorhabditis elegans Y45F10A.7 (Y45F10A.7) mRNA, complete cds. 11/11 None
SNAP00000021289 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13494742:13499672:1 11/11 None
GENEFINDER00000021295 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13492540:13497035:1 11/11 None
Y45F10A.7 ENSEMBL cdna:known chromosome:CEL140:IV:13492540:13497098:1 gene:Y45F10A.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13495013-13497041(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45F10A.7
Entrez Gene 178318 Entrez gene
SwissProt O62456 EMBL-EBI
WormBase CE35664 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258754_AT glutaredoxin-related at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16363 Hypothetical protein Y45F10A.7 [Caenorhabditis elegans] ref|NP_502601.2| Y45F10A.7 [Caenorhabditis elegans] 0.0
blast CAE58595 Hypothetical protein CBG01762 [Caenorhabditis briggsae] 0.0
blast CAE58595 Hypothetical protein CBG01762 [Caenorhabditis briggsae] 1.0E-169
blast CAE58595 Hypothetical protein CBG01762 [Caenorhabditis briggsae] 1.0E-167
blast T26907 hypothetical protein Y45F10A.8 - Caenorhabditis elegans 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR006869 EMBL-EBI Protein of unknown function DUF547 7.9E-23
Pfam IPR000591 EMBL-EBI Pleckstrin putative G-protein interacting domain 5.9E-8
Pfam IPR006869 EMBL-EBI Protein of unknown function DUF547 7.9E-23
Pfam IPR006869 EMBL-EBI Protein of unknown function DUF547 7.9E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000021295 1 177-199
Sequence
Target Sequence 
>C. ELEGANS:184990_AT
aacacggtccgccaatcggtatttggcagagacggaagcttgtgaatggaacatattact
tgattggtggccatcggtatgcgttacattctattataaatggtattcttcgtggaaaca
agaaaggtcccggaatgttatggaaagcgttcgggaaacaagatgcaagacttccaatct
ctttagctgtctgtgatccgttgatctacttctcgctgtgttcaggatcgaagacgacac
ctccattaagagtttatcattcgaagtctatccaccaagaaatgcgtgaaaacgcccgtc
aaaccctgctcagaggcgacaagttcctgcgagtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACGGTCCGCCAATCGGTATTTG 573 87 314 Antisense
GGAACATATTACTTGATTGGTGGCC 151 529 361 Antisense
GTGGCCATCGGTATGCGTTACATTC 670 491 380 Antisense
GATGCAAGACTTCCAATCTCTTTAG 354 413 475 Antisense
ATCTCTTTAGCTGTCTGTGATCCGT 673 31 490 Antisense
TGTGATCCGTTGATCTACTTCTCGC 171 557 505 Antisense
TACTTCTCGCTGTGTTCAGGATCGA 354 645 520 Antisense
ATCGAAGACGACACCTCCATTAAGA 386 37 540 Antisense
GTTTATCATTCGAAGTCTATCCACC 446 449 565 Antisense
TCAAACCCTGCTCAGAGGCGACAAG 380 629 612 Antisense
GAGGCGACAAGTTCCTGCGAGTCGA 24 407 626 Antisense
Sequence Source Affymetrix Proprietary Database