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[184989_at] 7TM chemoreceptor, srh family

Description Y47G7B.1 /REP_DB=WormBase Gene ID /WP=CE26432 /TR=Q9TZD7 /GB=AAK71875.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 13      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 57.3
(-1.3)
A 		17.4
(-3)
A 		23.4
(-2.7)
A 		154.3
(3)
P 		137
B 63.3
(3)
A 		19.3
(-3)
A 		29.6
(-1.6)
A 		55.1
(1.9)
A 		44
C 72
(0.1)
A 		38.6
(-1.7)
A 		15.8
(-3)
A 		123.7
(3)
P 		108
avr 64.2
(-0.2) 		25.1
(-2.9) 		22.9
(-3) 		111
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 56.9
(3)
A 		12.4
(-1.9)
A 		39.8
(1.1)
A 		2.1
(-3)
A 		38
(0.9)
A 		54.8
(2.8)
A 		55
B 33.6
(1.1)
A 		9.2
(-2.3)
A 		47.6
(3)
A 		9.6
(-2.2)
A 		4
(-3)
A 		10.7
(-2.1)
A 		44
C 47.7
(3)
A 		30.2
(0.7)
A 		2.7
(-3)
A 		31.3
(0.8)
A 		5.5
(-2.6)
A 		21.4
(-0.5)
A 		45
avr 46.1
(3) 		17.3
(-2.4) 		30
(-0) 		14.3
(-3) 		15.8
(-2.7) 		29
(-0.2) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.9
(2.5)
A 		3.8
(-3)
A 		6.1
(-2.3)
A 		22.6
(3)
P 		19
B 20.2
(3)
A 		4.8
(-3)
A 		6.9
(-2.2)
A 		11.7
(-0.3)
A 		15
C 23.8
(3)
A 		11.1
(-1.2)
A 		5.5
(-3)
A 		20.9
(2)
P 		18
avr 21.6
(3) 		6.6
(-2.8) 		6.2
(-3) 		18.4
(1.8) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.5
(1.7)
A 		4.4
(-1.2)
A 		8.7
(0.8)
A 		0.5
(-3)
A 		11.5
(2.2)
A 		13.3
(3)
A 		13
B 11.7
(3)
A 		3.1
(-2.1)
A 		11.6
(2.9)
A 		2.5
(-2.5)
A 		1.6
(-3)
A 		4
(-1.6)
A 		10
C 17.7
(3)
A 		9.2
(0)
A 		0.7
(-3)
A 		6.3
(-1)
A 		1.8
(-2.6)
A 		7.2
(-0.7)
A 		17
avr 13.3
(3) 		5.6
(-1.5) 		7
(-0.7) 		3.1
(-3) 		5
(-1.9) 		8.2
(-0) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184989_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4737
Sequence Type Exemplar sequence
Representative Public ID Y47G7B.1 NCBI
Target Description Y47G7B.1 /REP_DB=WormBase Gene ID /WP=CE26432 /TR=Q9TZD7 /GB=AAK71875.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061937(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061937 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-128) (srh-128) mRNA, complete cds. 11/11 None
SNAP00000016796 ENSEMBL cdna:SNAP chromosome:CEL140:II:2703421:2705267:-1 11/11 None
Y47G7B.1 ENSEMBL cdna:known chromosome:CEL140:II:2703421:2705267:-1 gene:Y47G7B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2703419-2705266(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-128
Ensembl Y47G7B.1
Entrez Gene 189999 Entrez gene
SwissProt Q9TZD7 EMBL-EBI
WormBase CE26432 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK71875 Serpentine receptor, class h protein 128 [Caenorhabditis elegans] ref|NP_494338.1| Serpentine Receptor, class H family member (srh-128) [Caenorhabditis elegans] 0.0
blast T33561 hypothetical protein Y47G7B.1 - Caenorhabditis elegans 0.0
blast NP_504376 Serpentine Receptor, class H family member (srh-129) [Caenorhabditis elegans] gb|AAF98621.1| Serpentine receptor, class h protein 129 [Caenorhabditis elegans] 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494338.1 7 15-37,57-79,94-116,137-159,196-218,247-269,279-298
Y47G7B.1 7 15-37,57-79,94-116,137-159,196-218,247-269,279-298
SNAP00000016796 7 15-37,57-79,94-116,137-159,196-218,247-269,279-298
Sequence
Target Sequence 
>C. ELEGANS:184989_AT
atacaatagagaccatcccatgcctcccgccaaaaatctacgaaaacccaaatttcttcg
tcgcctccacaagcatctcgtttatacttctagatatgggcctgctctccatattcgtct
ttgctcaaatcatatttctcatcgtctattccgtaaaggaactgcaaaaacgtcttaaaa
acctgtcaaaagtgacgtcaactctgcaaaaacggttctcgaatgctctctacgcgcaag
tgtcgattccgatgatcgcctacgcatttccgacggtttacgtgtttttttcgtggattt
tcgggagcttcagtcaggcttgcaacaattttgtgtttataagcctggcatttcacggac
ttttatcgacatttaccacgttggcggtgcataaaccgtacagggagtcgctgaaggtct
ttctgccgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACAATAGAGACCATCCCATGCCT 157 25 518 Antisense
TGCCTCCCGCCAAAAATCTACGAAA 184 585 538 Antisense
CCTCCACAAGCATCTCGTTTATACT 204 267 581 Antisense
CTCCATATTCGTCTTTGCTCAAATC 635 235 624 Antisense
TATTTCTCATCGTCTATTCCGTAAA 205 663 650 Antisense
AAAAACGGTTCTCGAATGCTCTCTA 492 129 725 Antisense
CTACGCGCAAGTGTCGATTCCGATG 613 225 747 Antisense
GGAGCTTCAGTCAGGCTTGCAACAA 174 521 821 Antisense
TAAGCCTGGCATTTCACGGACTTTT 383 637 857 Antisense
GACATTTACCACGTTGGCGGTGCAT 147 371 885 Antisense
GTCGCTGAAGGTCTTTCTGCCGACT 208 475 924 Antisense
Sequence Source Affymetrix Proprietary Database