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[184988_s_at]

Description Y102A5C.8 /REP_DB=WormBase Gene ID /WP=CE20381 /TR=Q9XX81 /GB=CAA20954.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 9.3
(3)
A 		2.4
(-3)
A 		2.5
(-2.9)
A 		3.5
(-2)
A 		7
B 1.5
(-3)
A 		7.2
(-1.2)
A 		20.3
(3)
A 		3.8
(-2.3)
A 		19
C 1.6
(-3)
A 		42.5
(3)
A 		4.8
(-2.5)
A 		33
(1.6)
A 		41
avr 4.1
(-3) 		17.4
(3) 		9.2
(-0.7) 		13.4
(1.2) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 0.7
(-3)
A 		3.1
(-2.3)
A 		4.3
(-1.9)
A 		20.4
(3)
A 		16.9
(1.9)
A 		3.4
(-2.2)
A 		20
B 2
(-2.9)
A 		15.1
(1)
A 		4.5
(-2.2)
A 		2.6
(-2.7)
A 		21.7
(3)
A 		1.7
(-3)
A 		20
C 15.9
(-0.2)
A 		32.6
(3)
A 		14.3
(-0.5)
A 		13.7
(-0.6)
A 		12.2
(-0.9)
A 		1.4
(-3)
A 		31
avr 6.2
(-1.4) 		16.9
(3) 		7.7
(-0.8) 		12.2
(1.1) 		16.9
(3) 		2.2
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.4
(3)
A 		0.5
(-3)
A 		0.7
(-2.6)
A 		0.5
(-3)
A 		3
B 0.5
(-3)
A 		1.8
(-1.1)
A 		4.7
(3)
A 		0.8
(-2.6)
A 		4
C 0.5
(-3)
A 		12.2
(3)
A 		1.7
(-2.4)
A 		5.6
(-0.4)
A 		12
avr 1.5
(-3) 		4.8
(3) 		2.4
(-1.4) 		2.3
(-1.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.1
(-3)
A 		1.1
(-1.8)
A 		0.9
(-2.1)
A 		5.2
(3)
A 		5.1
(2.9)
A 		0.8
(-2.2)
A 		5
B 0.7
(-2.9)
A 		5
(0.2)
A 		1.1
(-2.6)
A 		0.7
(-2.9)
A 		8.8
(3)
A 		0.6
(-3)
A 		8
C 5.9
(0.4)
A 		9.9
(3)
A 		3.6
(-1)
A 		2.8
(-1.5)
A 		4
(-0.8)
A 		0.5
(-3)
A 		9
avr 2.2
(-1.2) 		5.3
(2.2) 		1.9
(-1.6) 		2.9
(-0.4) 		6
(3) 		0.6
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184988_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13586
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.8 NCBI
Target Description Y102A5C.8 /REP_DB=WormBase Gene ID /WP=CE20381 /TR=Q9XX81 /GB=CAA20954.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074879(11), NM_074884(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074879 NCBI Caenorhabditis elegans Y102A5C.8 (Y102A5C.8) mRNA, complete cds. 11/11 None
NM_074884 NCBI Caenorhabditis elegans Y102A5C.14 (Y102A5C.14) mRNA, complete cds. 11/11 None
SNAP00000003155 ENSEMBL cdna:SNAP chromosome:CEL140:V:16951237:16952252:-1 11/11 None
GENEFINDER00000003187 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16938781:16941062:1 11/11 None
GENEFINDER00000003190 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16951237:16952252:-1 11/11 None
Y102A5C.8 ENSEMBL cdna:known chromosome:CEL140:V:16939853:16941062:1 gene:Y102A5C.8 11/11 None
Y102A5C.14 ENSEMBL cdna:known chromosome:CEL140:V:16951237:16952252:-1 gene:Y102A5C.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16939852-16941062(+) 100.0 100.0
chrV:16951236-16952170(-) 96.36 96.36
chrV:16927563-16928621(-) 96.36 96.36
Public Domain and Genome References
Gene Title

Ensembl Y102A5C.8
Y102A5C.14
Entrez Gene 190833 Entrez gene
190838 Entrez gene
SwissProt Q9XX88 EMBL-EBI
Q9XX81 EMBL-EBI
WormBase CE20386 Wormbase
CE20381 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4553 hydrolase activity, hydrolyzing O-glycosyl compounds inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA20947 Hypothetical protein Y102A5C.14 [Caenorhabditis elegans] ref|NP_507285.1| Y102A5C.14 [Caenorhabditis elegans] 1.0E-164
blast CAA20954 Hypothetical protein Y102A5C.8 [Caenorhabditis elegans] ref|NP_507280.1| Y102A5C.8 [Caenorhabditis elegans] 1.0E-126
blast CAA20947 Hypothetical protein Y102A5C.14 [Caenorhabditis elegans] ref|NP_507285.1| Y102A5C.14 [Caenorhabditis elegans] 1.0E-108
blast CAA20954 Hypothetical protein Y102A5C.8 [Caenorhabditis elegans] ref|NP_507280.1| Y102A5C.8 [Caenorhabditis elegans] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.9E-37
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.7E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.1E-46
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.6E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.9E-37
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.7E-12
Sequence
Target Sequence 
>C. ELEGANS:184988_S_AT
gattttctctccggagagtgtgtcggaatctgagaaacgtcattgataacagagacccgg
aaattgagcaagtacatgttcttttccagtcaaaccaaagtgttcttactatcaactcaa
catttgagtttgactacaatctgtatgctatactggatgatttggcaaccctagatgtgt
taactttcttgccccttttcaaacctggaattctagaagagattgtcataactacgttcg
agccaatagaaaacgatgaagcatttgatataattgaaacagaacaatggaaacaagcaa
aatcaattactttgcattcggtgaacacattgagttacttcacttttcccattgaacacc
tttttcatctgtgcaaattctctgttccattggtagaattaaaaatttctgatgcagtta
aaatcagagatgttctcctgaaatccgtacattttgaagctggtcaaatcaatgtaaaaa
acaaaatccaggatgatgttttgagagttttcaacccagaattcaacgataatatttttc
gctatgacaattttgaactcacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTCTCTCCGGAGAGTGTGTCG 565 429 101 Antisense
GTGTCGGAATCTGAGAAACGTCATT 447 487 120 Antisense
GTACATGTTCTTTTCCAGTCAAACC 86 461 172 Antisense
AAAGTGTTCTTACTATCAACTCAAC 318 121 197 Antisense
GAGTTTGACTACAATCTGTATGCTA 405 399 226 Antisense
GAGATTGTCATAACTACGTTCGAGC 578 397 319 Antisense
ATTGAGTTACTTCACTTTTCCCATT 332 3 429 Antisense
AATCCGTACATTTTGAAGCTGGTCA 245 167 542 Antisense
GAGTTTTCAACCCAGAATTCAACGA 347 399 605 Antisense
CAACGATAATATTTTTCGCTATGAC 448 183 624 Antisense
GCTATGACAATTTTGAACTCACTTT 680 303 641 Antisense
Sequence Source Affymetrix Proprietary Database