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[184987_at]

Description Y49A10A.1 /REP_DB=WormBase Gene ID /WP=CE19200 /TR=Q9XWW8 /GB=CAA21520.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 38      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 61.6
(2.6)
A 		14.7
(-2.1)
A 		5.9
(-3)
A 		65.9
(3)
A 		60
B 76.8
(3)
M 		47.8
(0.6)
A 		3.2
(-3)
A 		5.2
(-2.8)
A 		74
C 84
(3)
A 		23.3
(-1.6)
A 		4.4
(-3)
A 		32.3
(-0.9)
A 		80
avr 74.1
(3) 		28.6
(-0.9) 		4.5
(-3) 		34.5
(-0.4) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 64.2
(3)
A 		25.3
(-0.8)
A 		18.1
(-1.5)
A 		17.7
(-1.6)
A 		16.9
(-1.6)
A 		2.9
(-3)
A 		61
B 62.2
(3)
A 		17.6
(-1.7)
A 		4.9
(-3)
A 		7.1
(-2.8)
A 		26.9
(-0.7)
A 		24.3
(-1)
A 		57
C 25.4
(-0.2)
A 		30.5
(1)
A 		14.1
(-3)
A 		38.4
(3)
A 		17.9
(-2.1)
A 		22.5
(-0.9)
A 		24
avr 50.6
(3) 		24.5
(-1.1) 		12.4
(-3) 		21.1
(-1.6) 		20.6
(-1.7) 		16.6
(-2.3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 22.4
(3)
A 		3.2
(-2.5)
A 		1.6
(-3)
A 		9.6
(-0.7)
A 		21
B 24.5
(3)
M 		11.8
(-0.2)
A 		0.7
(-3)
A 		1.1
(-2.9)
A 		24
C 27.8
(3)
A 		6.7
(-1.8)
A 		1.5
(-3)
A 		5.5
(-2.1)
A 		26
avr 24.9
(3) 		7.2
(-1.5) 		1.3
(-3) 		5.4
(-2) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 11.8
(3)
A 		9
(1.5)
A 		3.9
(-1.3)
A 		4.5
(-0.9)
A 		5.1
(-0.6)
A 		0.7
(-3)
A 		11
B 21.6
(3)
A 		5.9
(-1.6)
A 		1.2
(-3)
A 		1.9
(-2.8)
A 		10.9
(-0.1)
A 		9
(-0.7)
A 		20
C 9.4
(3)
A 		9.3
(2.9)
A 		3.6
(-3)
A 		7.7
(1.2)
A 		5.8
(-0.7)
A 		7.5
(1)
A 		6
avr 14.3
(3) 		8.1
(-0.3) 		2.9
(-3) 		4.7
(-2.1) 		7.3
(-0.7) 		5.7
(-1.5) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184987_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15989
Sequence Type Exemplar sequence
Representative Public ID Y49A10A.1 NCBI
Target Description Y49A10A.1 /REP_DB=WormBase Gene ID /WP=CE19200 /TR=Q9XWW8 /GB=CAA21520.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077337(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077337 NCBI Caenorhabditis elegans Y49A10A.1 (Y49A10A.1) mRNA, complete cds. 11/11 None
SNAP00000001063 ENSEMBL cdna:SNAP chromosome:CEL140:X:10358422:10360242:1 9/11 None
GENEFINDER00000001069 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10358422:10360403:1 11/11 None
Y49A10A.1 ENSEMBL cdna:known chromosome:CEL140:X:10358422:10360403:1 gene:Y49A10A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10358421-10360403(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y49A10A.1
Entrez Gene 190059 Entrez gene
SwissProt Q9XWW8 EMBL-EBI
WormBase CE19200 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1603191_AT similar to EF-hand domain (C-terminal) containing 1 cfa
CANINE_2:CFAAFFX.4200.1.S1_AT similar to EF-hand domain (C-terminal) containing 1 cfa
CHICKEN:GGAAFFX.10666.1.S1_AT similar to hypothetical protein FLJ10466; EF-hand domain containing 1 gga
HG-U133_PLUS_2:231026_AT EF-hand domain (C-terminal) containing 1 hs
HG-U133B:231026_AT EF-hand domain (C-terminal) containing 1 hs
HG-U133_PLUS_2:219833_S_AT EF-hand domain (C-terminal) containing 1 hs
HG-U133A:219833_S_AT EF-hand domain (C-terminal) containing 1 hs
HG-U133A_2:219833_S_AT EF-hand domain (C-terminal) containing 1 hs
U133_X3P:G8922435_3P_A_AT EF-hand domain (C-terminal) containing 1 hs
U133_X3P:HS.160927.0.A1_3P_AT EF-hand domain (C-terminal) containing 1 hs
HG-U95C:60750_AT EF-hand domain (C-terminal) containing 1 hs
HG-U95C:61217_AT EF-hand domain (C-terminal) containing 1 hs
HG-U95E:74121_AT EF-hand domain (C-terminal) containing 1 hs
HG-U95E:78489_AT EF-hand domain (C-terminal) containing 1 hs
HG-U95D:84070_AT EF-hand domain (C-terminal) containing 1 hs
U133_X3P:HS.121073.1.S1_3P_AT EF-hand domain (C-terminal) containing 1 hs
HG-U133_PLUS_2:225656_AT EF-hand domain (C-terminal) containing 1 hs
HG-U133B:225656_AT EF-hand domain (C-terminal) containing 1 hs
HG-U95E:88690_AT EF-hand domain (C-terminal) containing 1 hs
MOE430B:1453159_AT EF-hand domain (C-terminal) containing 1 mm
MOUSE430_2:1453159_AT EF-hand domain (C-terminal) containing 1 mm
MG-U74BV2:115277_AT EF-hand domain (C-terminal) containing 1 mm
RAE230B:1384031_AT similar to EF-hand domain (C-terminal) containing 1 rn
RAT230_2:1384031_AT similar to EF-hand domain (C-terminal) containing 1 rn
Protein Similarities
Method ID Description E-Value
blast CAA21520 Hypothetical protein Y49A10A.1 [Caenorhabditis elegans] ref|NP_509738.1| Y49A10A.1 [Caenorhabditis elegans] 0.0
blast CAE70568 Hypothetical protein CBG17221 [Caenorhabditis briggsae] 0.0
blast XP_420047 PREDICTED: similar to hypothetical protein FLJ10466; EF-hand domain containing 1 [Gallus gallus] 2.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR010554 EMBL-EBI Protein of unknown function DUF1126 1.7E-17
Pfam IPR010554 EMBL-EBI Protein of unknown function DUF1126 3.0E-17
Sequence
Target Sequence 
>C. ELEGANS:184987_AT
tgttctgaccatacagttgcgcttatagaagaaacaaaagaattcgagggtcagctattt
ttgaagaggatcgctcttccatttccagtacaaccagacatggtaaaacgtgattatcgc
tggtgggatattaggccaggagtgtgggttgatgttttttgtcgaccgatgtttgtgttc
gagtgtgccaacgacgaaactaaatcttttacaaggcaacaatttggagagacagacttt
gctaactatagcagtcagattttggaagaaggtcctccaacaacgcaattttttaattca
ccatcaatattgaagtttcgttgcacaatggttgatgctccttctgtattgtacggtctt
cattttcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCTGACCATACAGTTGCGCTTA 523 561 853 Antisense
AGAATTCGAGGGTCAGCTATTTTTG 138 75 891 Antisense
GAAGAGGATCGCTCTTCCATTTCCA 327 337 915 Antisense
CTTCCATTTCCAGTACAACCAGACA 582 219 928 Antisense
GTTGATGTTTTTTGTCGACCGATGT 508 437 1000 Antisense
GTTTGTGTTCGAGTGTGCCAACGAC 610 451 1023 Antisense
GGAGAGACAGACTTTGCTAACTATA 327 519 1078 Antisense
TCCTCCAACAACGCAATTTTTTAAT 193 589 1125 Antisense
GTTGCACAATGGTTGATGCTCCTTC 222 439 1172 Antisense
ATGCTCCTTCTGTATTGTACGGTCT 578 41 1187 Antisense
TATTGTACGGTCTTCATTTTCTTCT 327 665 1199 Antisense
Sequence Source Affymetrix Proprietary Database