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[184985_s_at]

Description Y74C9A.2 /REP_DB=WormBase Gene ID /WP=CE24660 /TR=Q9N4D8 /GB=AAF36049.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 25      6grp_total > 62      4grp_total > 23      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2718
1 2 3 4 range
A 5699.9
(3)
P 		3681.1
(-2)
P 		3288.3
(-3)
P 		5011
(1.3)
P 		2412
B 5808.2
(3)
P 		3278.1
(-3)
P 		3308.8
(-2.9)
P 		4803.9
(0.6)
P 		2530
C 4837.7
(2.1)
P 		3212.9
(-2.6)
P 		3090.2
(-3)
P 		5166.1
(3)
P 		2076
avr 5448.6
(3) 		3390.7
(-2.6) 		3229.1
(-3) 		4993.7
(1.8) 		2220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3407
1 2 3 4 5 6 range
A 3757.9
(-2.3)
P 		4292.1
(-1.3)
P 		6749.5
(3)
P 		5585.1
(0.9)
P 		3779.8
(-2.2)
P 		3342.1
(-3)
P 		3407
B 3712.2
(-2.6)
P 		5371.2
(1.1)
P 		6191.2
(3)
P 		5040.4
(0.4)
P 		4491.6
(-0.9)
P 		3545.9
(-3)
P 		2645
C 4015.7
(-2)
P 		5283.8
(1.3)
P 		5333.3
(1.4)
P 		5932.1
(3)
P 		4147.7
(-1.6)
P 		3617.1
(-3)
P 		2315
avr 3828.6
(-2.2) 		4982.4
(0.4) 		6091.3
(3) 		5519.2
(1.7) 		4139.7
(-1.5) 		3501.7
(-3) 		2590
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1342
1 2 3 4 range
A 2075.3
(3)
P 		799.1
(-2.7)
P 		859.6
(-2.4)
P 		733.5
(-3)
P 		1342
B 1852.2
(3)
P 		809.6
(-2.8)
P 		766.7
(-3)
P 		1023.7
(-1.6)
P 		1086
C 1601.4
(3)
P 		923.7
(-2.6)
P 		1077
(-1.3)
P 		871.1
(-3)
P 		730
avr 1843
(3) 		844.1
(-3) 		901.1
(-2.7) 		876.1
(-2.8) 		999

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1132
1 2 3 4 5 6 range
A 692.7
(-3)
P 		1526.5
(3)
P 		1469.9
(2.6)
P 		1416.5
(2.2)
P 		1140.6
(0.2)
P 		813.7
(-2.1)
P 		834
B 1291.7
(-3)
P 		1787.8
(2.6)
P 		1503.4
(-0.6)
P 		1335
(-2.5)
P 		1824.9
(3)
P 		1322.2
(-2.7)
P 		533
C 1488.4
(1.2)
P 		1612.2
(3)
P 		1357.4
(-0.6)
P 		1192.9
(-3)
P 		1342.2
(-0.9)
P 		1210.8
(-2.7)
P 		419
avr 1157.6
(-2.5) 		1642.2
(3) 		1443.6
(0.7) 		1314.8
(-0.7) 		1435.9
(0.6) 		1115.6
(-3) 		527
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184985_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2581
Sequence Type Exemplar sequence
Representative Public ID Y74C9A.2 NCBI
Target Description Y74C9A.2 /REP_DB=WormBase Gene ID /WP=CE24660 /TR=Q9N4D8 /GB=AAF36049.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058259(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058259 NCBI Caenorhabditis elegans Y74C9A.2 (Y74C9A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000028631 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11641:16585:1 11/11 None
SNAP00000028621 ENSEMBL cdna:SNAP chromosome:CEL140:I:13375:16585:1 9/11 None
Y74C9A.2.4 ENSEMBL cdna:known chromosome:CEL140:I:11495:16793:1 gene:Y74C9A.2 11/11 None
Y74C9A.2.1 ENSEMBL cdna:known chromosome:CEL140:I:11499:16828:1 gene:Y74C9A.2 11/11 None
Y74C9A.2.5 ENSEMBL cdna:known chromosome:CEL140:I:11499:16790:1 gene:Y74C9A.2 11/11 None
Y74C9A.2.3 ENSEMBL cdna:known chromosome:CEL140:I:11616:16831:1 gene:Y74C9A.2 11/11 None
Y74C9A.2.2 ENSEMBL cdna:known chromosome:CEL140:I:11618:16828:1 gene:Y74C9A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11640-16585(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y74C9A.2
Entrez Gene 171591 Entrez gene
SwissProt Q9N4D8 EMBL-EBI
WormBase CE24660 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36049 Hypothetical protein Y74C9A.2 [Caenorhabditis elegans] ref|NP_490661.1| Y74C9A.2 [Caenorhabditis elegans] 5.0E-62
blast AAF36049 Hypothetical protein Y74C9A.2 [Caenorhabditis elegans] ref|NP_490661.1| Y74C9A.2 [Caenorhabditis elegans] 3.0E-53
blast CAE60324 Hypothetical protein CBG03916 [Caenorhabditis briggsae] 3.0E-52
Sequence
Target Sequence 
>C. ELEGANS:184985_S_AT
gaaactcgtaattctgctatcttttgttgcgacagttgcggtttttgcggctccatcggc
tccggcaggtctcgaggagaagctgcgtgctcttcaggagcaactgtacagtctggagaa
agagaacggagttgatgtgaagcaaaaggagcaaccagcagcagccgacacattccttgg
atttgttccacagaagagaatggtcgcgtggcagccgatgaagcggtcgatgatcaatga
ggattctagagctccattgctccacgcaatcgaagcccgcttggccgaagtgttgagagc
cggagaacgcctcggagtcaacccggaggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTCGTAATTCTGCTATCTTTT 390 357 15 Antisense
GCTATCTTTTGTTGCGACAGTTGCG 672 301 30 Antisense
GAAGCTGCGTGCTCTTCAGGAGCAA 266 343 93 Antisense
GCTCTTCAGGAGCAACTGTACAGTC 243 301 103 Antisense
CAAAAGGAGCAACCAGCAGCAGCCG 263 191 157 Antisense
CAGCCGACACATTCCTTGGATTTGT 409 203 176 Antisense
AGAAGAGAATGGTCGCGTGGCAGCC 24 75 206 Antisense
GCGTGGCAGCCGATGAAGCGGTCGA 694 291 220 Antisense
CCCGCTTGGCCGAAGTGTTGAGAGC 96 259 290 Antisense
TTGAGAGCCGGAGAACGCCTCGGAG 111 653 307 Antisense
CGCCTCGGAGTCAACCCGGAGGAAG 432 255 322 Antisense
Sequence Source Affymetrix Proprietary Database