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[184984_s_at]

Description Y73C8B.1 /REP_DB=WormBase Gene ID /WP=CE24639 /TR=Q9N4E0 /GB=AAF36044.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_highest_nonorm > 91      6grp_total > 57      4grp_total > 10      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 491
1 2 3 4 range
A 202.4
(-2.2)
P 		280.4
(-1.2)
P 		143.2
(-3)
P 		594.2
(3)
P 		451
B 217.7
(-3)
P 		235.1
(-2.7)
P 		228.4
(-2.8)
P 		631
(3)
P 		413
C 239.5
(-2.6)
P 		235.3
(-2.7)
P 		212.3
(-3)
P 		633.9
(3)
P 		422
avr 219.9
(-2.6) 		250.3
(-2.2) 		194.6
(-3) 		619.7
(3) 		425

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 525
1 2 3 4 5 6 range
A 253.8
(2.3)
P 		169.4
(-0.3)
P 		172.9
(-0.2)
P 		108.5
(-2.2)
P 		81.5
(-3)
P 		275.2
(3)
P 		194
B 325
(-0.3)
P 		163.6
(-2.3)
P 		178.3
(-2.1)
P 		101.3
(-3)
P 		127.8
(-2.7)
P 		606.5
(3)
P 		505
C 272.5
(0.3)
P 		185.1
(-1.3)
P 		92.8
(-3)
P 		101
(-2.8)
P 		91
(-3)
P 		425.8
(3)
P 		335
avr 283.8
(0.3) 		172.7
(-1.7) 		148
(-2.1) 		103.6
(-2.9) 		100.1
(-3) 		435.8
(3) 		336
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 73.7
(1.4)
P 		60.9
(-0.2)
P 		37.4
(-3)
P 		87
(3)
P 		50
B 69.4
(-1.8)
P 		58.1
(-2.6)
P 		52.9
(-3)
P 		134.5
(3)
P 		82
C 79.3
(-1.2)
P 		67.6
(-3)
P 		74
(-2)
P 		106.9
(3)
P 		39
avr 74.1
(-0.9) 		62.2
(-2.2) 		54.8
(-3) 		109.5
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 46.8
(0.1)
P 		60.3
(2.1)
P 		37.7
(-1.1)
P 		27.5
(-2.6)
P 		24.6
(-3)
P 		67
(3)
P 		42
B 113.1
(-0.4)
P 		54.5
(-2.2)
P 		43.3
(-2.5)
P 		26.8
(-3)
P 		51.9
(-2.2)
P 		226.1
(3)
P 		199
C 101
(1)
P 		56.5
(-1.2)
P 		23.6
(-2.8)
P 		20.3
(-3)
P 		29.4
(-2.6)
P 		142.6
(3)
P 		122
avr 87
(0.1) 		57.1
(-1.4) 		34.9
(-2.5) 		24.9
(-3) 		35.3
(-2.5) 		145.2
(3) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184984_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15097
Sequence Type Exemplar sequence
Representative Public ID Y73C8B.1 NCBI
Target Description Y73C8B.1 /REP_DB=WormBase Gene ID /WP=CE24639 /TR=Q9N4E0 /GB=AAF36044.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071479(11), NM_071480(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071479 NCBI Caenorhabditis elegans Y73C8B.1 (Y73C8B.1) mRNA, complete cds. 11/11 A 
NM_071480 NCBI Caenorhabditis elegans K08D9.4 (K08D9.4) mRNA, complete cds. 11/11 A 
SNAP00000017182 ENSEMBL cdna:SNAP chromosome:CEL140:V:3198513:3200240:-1 11/11 None
GENEFINDER00000017190 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3198513:3200359:-1 11/11 None
SNAP00000021843 ENSEMBL cdna:SNAP chromosome:CEL140:V:3195314:3196667:-1 11/11 None
GENEFINDER00000021846 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3195314:3196667:-1 11/11 None
Y73C8B.1 ENSEMBL cdna:known chromosome:CEL140:V:3195314:3196667:-1 gene:Y73C8B.1 11/11 A 
K08D9.4 ENSEMBL cdna:known chromosome:CEL140:V:3198500:3200359:-1 gene:K08D9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3195313-3196667(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y73C8B.1
K08D9.4
Entrez Gene 187147 Entrez gene
190658 Entrez gene
SwissProt Q9TXN5 EMBL-EBI
Q9N4E0 EMBL-EBI
WormBase CE23863 Wormbase
CE24639 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69354 Hypothetical protein K08D9.4 [Caenorhabditis elegans] ref|NP_503881.1| K08D9.4 [Caenorhabditis elegans] 0.0
blast AAF36044 Hypothetical protein Y73C8B.1 [Caenorhabditis elegans] ref|NP_503880.1| Y73C8B.1 [Caenorhabditis elegans] 1.0E-177
blast AAC69354 Hypothetical protein K08D9.4 [Caenorhabditis elegans] ref|NP_503881.1| K08D9.4 [Caenorhabditis elegans] 1.0E-175
blast AAC69354 Hypothetical protein K08D9.4 [Caenorhabditis elegans] ref|NP_503881.1| K08D9.4 [Caenorhabditis elegans] 1.0E-165
blast AAF36044 Hypothetical protein Y73C8B.1 [Caenorhabditis elegans] ref|NP_503880.1| Y73C8B.1 [Caenorhabditis elegans] 1.0E-165
Protein Domains
Database ID Description E-Value
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 2.5E-119
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.2E-76
Sequence
Target Sequence 
>C. ELEGANS:184984_S_AT
gtgatcataatggggcatagcagagggtgtgaaagtgcactgataacagctactaatcgg
aaacctcatggactagtaatggttaatccgactggattgagaattcataaagggtctcgt
ccgaagggaaagctggaatctctggtatatttccataaaaaattgccgaaaacggtagga
gataccattatgtataatttaatgaaatcggtcggatttaaaattcaagacggagaggaa
gccgtggcggttattcgagcaattatgaactgtgacctggaaaagcaactggaatacatt
ctgaaattgaatgaacagcccacaaaaactatgatcacttttgggggaagcgatcattta
attgaaaaggaaattgtttttgaagcactcaaaaagtatcagggactcgcgcattttaat
ttcaaagcgaacatcacagaatctgaaaagcagaaaataatggagagtttcaaaaatcaa
aaaggaacatctgtatttattgcaaaggataaccattttcaaaataagaagcgggcggat
ttattggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATCATAATGGGGCATAGCAGAG 67 481 370 Antisense
CTAATCGGAAACCTCATGGACTAGT 283 29 422 Antisense
GTGGCGGTTATTCGAGCAATTATGA 493 489 613 Antisense
GAGCAATTATGAACTGTGACCTGGA 261 391 626 Antisense
GAACTGTGACCTGGAAAAGCAACTG 373 349 636 Antisense
GAAAAGCAACTGGAATACATTCTGA 459 353 649 Antisense
GGAAATTGTTTTTGAAGCACTCAAA 328 527 738 Antisense
AAAAAGTATCAGGGACTCGCGCATT 661 129 760 Antisense
GACTCGCGCATTTTAATTTCAAAGC 623 373 773 Antisense
GGAACATCTGTATTTATTGCAAAGG 177 529 853 Antisense
TAAGAAGCGGGCGGATTTATTGGCA 677 627 894 Antisense
Sequence Source Affymetrix Proprietary Database