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[184983_at]

Description Y73C8B.1 /REP_DB=WormBase Gene ID /WP=CE24639 /TR=Q9N4E0 /GB=AAF36044.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 13      6grp_total > 67      4grp_total > 10      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 47.4
(-3)
P 		71.5
(-1.8)
P 		56
(-2.6)
P 		166.2
(3)
P 		119
B 54.2
(-2.7)
P 		46.2
(-3)
P 		50
(-2.8)
P 		190
(3)
P 		144
C 38.3
(-2.9)
P 		58.2
(-2.1)
M 		36.2
(-3)
P 		182.5
(3)
P 		146
avr 46.6
(-3) 		58.6
(-2.5) 		47.4
(-3) 		179.6
(3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 68.3
(-0.2)
A 		24.1
(-2.6)
A 		34.4
(-2)
P 		16.5
(-3)
A 		28.7
(-2.3)
A 		126.5
(3)
P 		110
B 50.5
(-2.4)
P 		54.7
(-2.3)
A 		47.9
(-2.5)
P 		35.7
(-3)
A 		51.4
(-2.4)
P 		191.1
(3)
P 		155
C 59.9
(-2.1)
P 		71.7
(-1.6)
P 		46.3
(-2.8)
A 		48.3
(-2.7)
A 		41.2
(-3)
P 		170.2
(3)
P 		129
avr 59.6
(-1.8) 		50.2
(-2.2) 		42.9
(-2.6) 		33.5
(-3) 		40.4
(-2.7) 		162.6
(3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 17.3
(-1.3)
P 		15.5
(-2.4)
P 		14.6
(-3)
P 		24.3
(3)
P 		10
B 17.3
(-1.8)
P 		11.4
(-3)
P 		11.6
(-3)
P 		40.5
(3)
P 		29
C 12.7
(-3)
P 		16.7
(-1.6)
M 		12.6
(-3)
P 		30.8
(3)
P 		18
avr 15.8
(-2.1) 		14.5
(-2.5) 		12.9
(-3) 		31.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 12.6
(-1.1)
A 		8.6
(-2)
A 		7.5
(-2.3)
P 		4.2
(-3)
A 		8.7
(-2)
A 		30.8
(3)
P 		27
B 17.6
(-2.2)
P 		18.2
(-2.2)
A 		11.6
(-2.8)
P 		9.5
(-3)
A 		20.9
(-1.9)
P 		71.3
(3)
P 		62
C 22.2
(-1.4)
P 		21.9
(-1.5)
P 		11.8
(-2.7)
A 		9.7
(-3)
A 		13.3
(-2.5)
P 		57
(3)
P 		47
avr 17.5
(-1.7) 		16.2
(-1.9) 		10.3
(-2.7) 		7.8
(-3) 		14.3
(-2.1) 		53
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184983_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15097
Sequence Type Exemplar sequence
Representative Public ID Y73C8B.1 NCBI
Target Description Y73C8B.1 /REP_DB=WormBase Gene ID /WP=CE24639 /TR=Q9N4E0 /GB=AAF36044.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071479(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071479 NCBI Caenorhabditis elegans Y73C8B.1 (Y73C8B.1) mRNA, complete cds. 11/11 A 
SNAP00000021843 ENSEMBL cdna:SNAP chromosome:CEL140:V:3195314:3196667:-1 11/11 None
GENEFINDER00000021846 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3195314:3196667:-1 11/11 None
Y73C8B.1 ENSEMBL cdna:known chromosome:CEL140:V:3195314:3196667:-1 gene:Y73C8B.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3195313-3196667(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73C8B.1
Entrez Gene 190658 Entrez gene
SwissProt Q9N4E0 EMBL-EBI
WormBase CE24639 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36044 Hypothetical protein Y73C8B.1 [Caenorhabditis elegans] ref|NP_503880.1| Y73C8B.1 [Caenorhabditis elegans] 1.0E-177
blast AAC69354 Hypothetical protein K08D9.4 [Caenorhabditis elegans] ref|NP_503881.1| K08D9.4 [Caenorhabditis elegans] 1.0E-165
blast AAF36045 Hypothetical protein Y73C8B.2 [Caenorhabditis elegans] ref|NP_503879.1| Y73C8B.2 [Caenorhabditis elegans] 3.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:184983_AT
gaaatagctactcagaagcattgttaaacgagctagatgtgcagggaaaagtgatcataa
tggggcatagcagagggtgtgaaagtgcactgataacagctactaatcggaaacctcatg
gactagtaatggttaatccgactggattgagaattcataaagggtctcgtccgaagggaa
agctggaatctctggtatatttccataaaaaattgccgaaaacggtaggagataccatta
tgtataatttaatgaaatcggtcggatttaaaattcaagacggagaggaagccgtggcgg
ttattcgagcaattatgaactgtgacctggaaaagcaactggaatacattctgaaattga
atgaacagcccacaaaaactatgatcacttttgggggaagcgatcatttaattgaaaagg
aaattgtttttgaagcactcaaaaagtatcagggactcgcgcattttaatttcaaagcga
acatcacagaatctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATAGCTACTCAGAAGCATTGTT 436 363 320 Antisense
GGGGCATAGCAGAGGGTGTGAAAGT 645 497 381 Antisense
GAAAGTGCACTGATAACAGCTACTA 162 361 400 Antisense
GACTAGTAATGGTTAATCCGACTGG 410 373 440 Antisense
ATCCGACTGGATTGAGAATTCATAA 263 39 455 Antisense
GAAGGGAAAGCTGGAATCTCTGGTA 38 335 492 Antisense
GAATCTCTGGTATATTTCCATAAAA 111 329 505 Antisense
AGACGGAGAGGAAGCCGTGGCGGTT 474 69 597 Antisense
AACAGCCCACAAAAACTATGATCAC 323 137 683 Antisense
ATCACTTTTGGGGGAAGCGATCATT 275 25 703 Antisense
TCAAAGCGAACATCACAGAATCTGA 246 629 791 Antisense
Sequence Source Affymetrix Proprietary Database