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[184982_s_at]

Description F56C11.3 /REP_DB=WormBase Gene ID /WP=CE17903 /TR=O44975 /GB=AAB97554.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 284
1 2 3 4 range
A 213.1
(-2.5)
A 		195.8
(-3)
P 		204.7
(-2.8)
A 		410.5
(3)
P 		215
B 126.2
(-3)
P 		228.9
(-0.3)
A 		188
(-1.4)
A 		352
(3)
P 		226
C 194.2
(-3)
P 		196.2
(-2.9)
A 		194
(-3)
M 		402.5
(3)
P 		209
avr 177.8
(-3) 		207
(-2.2) 		195.6
(-2.5) 		388.3
(3) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 197
(-2.7)
A 		228
(-0.7)
P 		242.6
(0.2)
P 		285.5
(3)
P 		192.5
(-3)
A 		270.9
(2.1)
P 		93
B 145
(-3)
A 		322.8
(0.7)
M 		308.9
(0.4)
P 		254.4
(-0.7)
P 		293.5
(0.1)
P 		432.6
(3)
P 		288
C 169.9
(-3)
A 		291.6
(-0.7)
M 		207.9
(-2.3)
P 		206.2
(-2.3)
P 		201.5
(-2.4)
P 		480.7
(3)
P 		311
avr 170.6
(-3) 		280.8
(-0) 		253.1
(-0.8) 		248.7
(-0.9) 		229.2
(-1.4) 		394.7
(3) 		224
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 77.6
(3)
A 		42.5
(-3)
P 		53.5
(-1.1)
A 		60.1
(0)
P 		35
B 40.3
(-3)
P 		56.5
(-0.2)
A 		43.6
(-2.4)
A 		75
(3)
P 		35
C 64.3
(1.1)
P 		56.4
(-3)
A 		67.6
(2.8)
M 		67.9
(3)
P 		12
avr 60.7
(0.4) 		51.8
(-3) 		54.9
(-1.8) 		67.7
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 36.3
(-3)
A 		81.1
(3)
P 		52.8
(-0.8)
P 		72.4
(1.8)
P 		58.1
(-0.1)
A 		66
(1)
P 		45
B 50.5
(-3)
A 		107.4
(0.1)
M 		75
(-1.7)
P 		67.4
(-2.1)
P 		119.2
(0.7)
P 		161.3
(3)
P 		111
C 63
(-1.9)
A 		89
(-0.6)
M 		52.9
(-2.4)
P 		41.5
(-3)
P 		65.2
(-1.8)
P 		160.9
(3)
P 		119
avr 49.9
(-3) 		92.5
(0.2) 		60.2
(-2.2) 		60.4
(-2.2) 		80.8
(-0.7) 		129.4
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184982_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2566
Sequence Type Exemplar sequence
Representative Public ID F56C11.3 NCBI
Target Description F56C11.3 /REP_DB=WormBase Gene ID /WP=CE17903 /TR=O44975 /GB=AAB97554.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058289(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058289 NCBI Caenorhabditis elegans F56C11.3 (F56C11.3) mRNA, complete cds. 11/11 None
SNAP00000010371 ENSEMBL cdna:SNAP chromosome:CEL140:I:182139:182772:-1 11/11 None
GENEFINDER00000010379 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:182139:182771:-1 11/11 None
F56C11.3 ENSEMBL cdna:known chromosome:CEL140:I:182139:182771:-1 gene:F56C11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:182138-182771(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56C11.3
Entrez Gene 171611 Entrez gene
SwissProt O44975 EMBL-EBI
WormBase CE17903 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586147_AT similar to erv1-like growth factor cfa
CANINE_2:CFA.11469.1.A1_S_AT similar to erv1-like growth factor cfa
CANINE_2:CFA.11469.2.A1_AT similar to erv1-like growth factor cfa
CANINE_2:CFA.11469.2.A1_X_AT similar to erv1-like growth factor cfa
DROSOPHILA_2:1630885_AT dm
DROSGENOME1:145394_AT dm
CHICKEN:GGAAFFX.26541.1.S1_AT similar to Growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration) gga
HG-U133_PLUS_2:204659_S_AT growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) hs
HG-U133A:204659_S_AT growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) hs
HG-FOCUS:204659_S_AT growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) hs
HG-U133A_2:204659_S_AT growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) hs
HU35KSUBC:RC_Z38787_S_AT growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) hs
HUGENEFL:U31176_AT growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) hs
HG-U133A:204660_AT growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) hs
HG-U133_PLUS_2:204660_AT growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) hs
HG-U133A_2:204660_AT growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) hs
U133_X3P:G4885264_3P_X_AT growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) hs
U133_X3P:G4885264_3P_AT growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) hs
U133_X3P:G4325313_3P_A_AT growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) hs
HG-U95AV2:41482_AT growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) hs
HG-U133_PLUS_2:228514_AT Growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) hs
HG-U133B:228514_AT Growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) hs
U133_X3P:HS.27184.1.S1_3P_AT Growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) hs
MU11KSUBB:MSA.6550.0_S_AT growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration) mm
MG-U74AV2:160269_AT growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration) mm
MOE430A:1452272_A_AT growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration) mm
MOUSE430A_2:1452272_A_AT growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration) mm
MOUSE430_2:1452272_A_AT growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration) mm
MOE430A:1426995_A_AT growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration) mm
MOUSE430A_2:1426995_A_AT growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration) mm
MOUSE430_2:1426995_A_AT growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration) mm
MU19KSUBA:TC23829_AT Growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration), transcript variant 2, mRNA (cDNA clone MGC:35826 IMAGE:5342526) mm
MU19KSUBA:TC23829_G_AT Growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration), transcript variant 2, mRNA (cDNA clone MGC:35826 IMAGE:5342526) mm
MU19KSUBB:TC31634_AT Growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration), transcript variant 2, mRNA (cDNA clone MGC:35826 IMAGE:5342526) mm
RG-U34A:D30735_AT growth factor, erv1 -like rn
RAE230A:1367867_AT growth factor, erv1 -like rn
RAT230_2:1367867_AT growth factor, erv1 -like rn
RAE230B:1381367_AT Growth factor, erv1 -like rn
RAT230_2:1381367_AT Growth factor, erv1 -like rn
YEAST_2:1778700_AT Flavin-linked sulfhydryl oxidase localized to the mitochondrial intermembrane space, has a role in the maturation of cytosolic iron-sulfur proteins; ortholog of human hepatopoietin (ALR) Sc
Protein Similarities
Method ID Description E-Value
blast AAB97554 Hypothetical protein F56C11.3 [Caenorhabditis elegans] ref|NP_490690.1| F56C11.3 [Caenorhabditis elegans] 7.0E-85
blast CAE74303 Hypothetical protein CBG22010 [Caenorhabditis briggsae] 8.0E-75
blast CAE74303 Hypothetical protein CBG22010 [Caenorhabditis briggsae] 9.0E-75
blast EAL40090 ENSANGP00000025411 [Anopheles gambiae str. PEST] ref|XP_557147.1| ENSANGP00000025411 [Anopheles gambiae str. PEST] 4.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR006863 EMBL-EBI Erv1/Alr 6.4E-60
Pfam IPR006863 EMBL-EBI Erv1/Alr 6.4E-60
Sequence
Target Sequence 
>C. ELEGANS:184982_S_AT
gtccagatggaaagccgtgtcgtgcatgcgtcagtgtagaggatatgatgaaaaaaggca
gagaaatggctgaaaaaataaagaaaaaagaatccgagacgacgccgagcacgagcacag
gagcgaagttgcacggatgtccagtagacaaggatgagctcggcagatccacgtggaatt
tgctacacacaatgtcggtttactacccggaaaagcctaccgacgaggataaggatcgag
ccagaagtttcatgtctattctaggaaaaacatatccctgcgatttctgcgccaaagatc
tccgaaaagatctgaaagaatcgccgccaaaagtggaaagccgcgaggcgtttgcgctat
ggatgtgccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCAGATGGAAAGCCGTGTCGTGC 200 477 23 Antisense
CGTGTCGTGCATGCGTCAGTGTAGA 567 243 38 Antisense
AAAGAATCCGAGACGACGCCGAGCA 602 123 109 Antisense
AGCGAAGTTGCACGGATGTCCAGTA 51 81 144 Antisense
AAGGATGAGCTCGGCAGATCCACGT 228 161 172 Antisense
GATCCACGTGGAATTTGCTACACAC 684 415 188 Antisense
TACACACAATGTCGGTTTACTACCC 421 641 206 Antisense
GGATCGAGCCAGAAGTTTCATGTCT 310 513 255 Antisense
TGCGATTTCTGCGCCAAAGATCTCC 50 585 301 Antisense
GTGGAAAGCCGCGAGGCGTTTGCGC 186 491 355 Antisense
GCGTTTGCGCTATGGATGTGCCAGC 476 291 370 Antisense
Sequence Source Affymetrix Proprietary Database