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[184981_at]

Description F16G10.5 /REP_DB=WormBase Gene ID /WP=CE19394 /TR=O76587 /GB=AAC26273.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 3.8
(-3)
A 		17.9
(3)
A 		9.3
(-0.7)
A 		8.8
(-0.9)
A 		14
B 57.5
(3)
A 		4.9
(-3)
A 		6.6
(-2.8)
A 		31.3
(0)
A 		53
C 7.4
(-3)
A 		15
(-2.2)
A 		9
(-2.8)
A 		66.6
(3)
A 		59
avr 22.9
(0.2) 		12.6
(-2.1) 		8.3
(-3) 		35.6
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 12.4
(3)
A 		2.8
(-3)
A 		11.8
(2.6)
A 		5.5
(-1.3)
A 		5.6
(-1.3)
A 		11.4
(2.4)
A 		10
B 5.9
(0.9)
A 		6.9
(3)
A 		6.4
(2)
A 		4
(-3)
A 		5
(-0.9)
A 		5.8
(0.7)
A 		3
C 4.1
(-1.1)
A 		8
(1.6)
A 		7.3
(1.1)
A 		5.3
(-0.3)
A 		10
(3)
A 		1.4
(-3)
A 		9
avr 7.5
(1.3) 		5.9
(-1.3) 		8.5
(3) 		4.9
(-3) 		6.9
(0.3) 		6.2
(-0.8) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.4
(-2.8)
A 		3.9
(3)
A 		2.4
(-0.5)
A 		1.3
(-3)
A 		3
B 18.3
(3)
A 		1.2
(-3)
A 		1.5
(-2.9)
A 		6.7
(-1.1)
A 		17
C 2.4
(-3)
A 		4.3
(-1.7)
A 		3.1
(-2.5)
A 		11.2
(3)
A 		9
avr 7.4
(3) 		3.1
(-2.1) 		2.3
(-3) 		6.4
(1.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 2.3
(1.3)
A 		1
(-3)
A 		2.6
(2.3)
A 		1.4
(-1.7)
A 		1.7
(-0.7)
A 		2.8
(3)
A 		2
B 2
(1.5)
A 		2.3
(3)
A 		1.6
(-0.5)
A 		1.1
(-3)
A 		2
(1.5)
A 		2.2
(2.5)
A 		1
C 1.5
(-0.8)
A 		2.4
(1.2)
A 		1.8
(-0.1)
A 		1.1
(-1.7)
A 		3.2
(3)
A 		0.5
(-3)
A 		3
avr 1.9
(0.8) 		1.9
(0.8) 		2
(1.4) 		1.2
(-3) 		2.3
(3) 		1.8
(0.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184981_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4211
Sequence Type Exemplar sequence
Representative Public ID F16G10.5 NCBI
Target Description F16G10.5 /REP_DB=WormBase Gene ID /WP=CE19394 /TR=O76587 /GB=AAC26273.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061855(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061855 NCBI Caenorhabditis elegans F16G10.5 (F16G10.5) mRNA, complete cds. 9/11 None
GENEFINDER00000023133 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2367503:2368709:1 9/11 None
F16G10.5 ENSEMBL cdna:known chromosome:CEL140:II:2367503:2368683:1 gene:F16G10.5 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023113 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2367501-2368708(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16G10.5
Entrez Gene 184580 Entrez gene
SwissProt O76587 EMBL-EBI
WormBase CE35490 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26273 Hypothetical protein F16G10.5 [Caenorhabditis elegans] ref|NP_494256.2| F16G10.5 [Caenorhabditis elegans] 1.0E-39
blast AAC26273 Hypothetical protein F16G10.5 [Caenorhabditis elegans] ref|NP_494256.2| F16G10.5 [Caenorhabditis elegans] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.2E-6
Sequence
Target Sequence 
>C. ELEGANS:184981_AT
gacggccaagaaccaggctccaagtcagagtggatcgtgaagccgcggaggctaggatga
gaagtcgaagccgtagccaaaacctcgacccagggccaaccatcgaaccatcgactttct
cggactccaccacgtcgccgatccgaggatcgcagatggatcgtcaaagccatatccttt
ctgttggattgaagaaggtattcattatcacttctattatactcctacagatttatcttc
aggcctcaaacggagagtttgggcttcaagttatggacggaattcgtggacctgtcatca
gtttcgtcagtccgggatccgcctctgctcacatcttccgagctggcgacgtgattatgg
cggtcaacgatagacaggttactgatatgaaaacggtgcaagattcctttgaagccgctg
ggaacgtcgtttggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGCCAAGAACCAGGCTCCAAGT 220 375 158 Antisense
CAGAGTGGATCGTGAAGCCGCGGAG 652 205 183 Antisense
AGTCGAAGCCGTAGCCAAAACCTCG 34 47 220 Antisense
ACCATCGAACCATCGACTTTCTCGG 577 85 256 Antisense
GTCAAAGCCATATCCTTTCTGTTGG 98 465 320 Antisense
TTATCACTTCTATTATACTCCTACA 17 681 362 Antisense
ACAGATTTATCTTCAGGCCTCAAAC 213 109 384 Antisense
GGACCTGTCATCAGTTTCGTCAGTC 191 523 445 Antisense
TCTTCCGAGCTGGCGACGTGATTAT 473 617 491 Antisense
GGTGCAAGATTCCTTTGAAGCCGCT 184 501 552 Antisense
AAGCCGCTGGGAACGTCGTTTGGAT 283 147 569 Antisense
Sequence Source Affymetrix Proprietary Database