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[184979_at]

Description F45E12.4 /REP_DB=WormBase Gene ID /WP=CE02740 /TR=Q20430 /GB=AAA68795.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 40      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 24      6grp_total > 41      4grp_total > 50      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1218
1 2 3 4 range
A 2802.2
(-3)
P 		3550.3
(3)
P 		3357.5
(1.5)
P 		2867.3
(-2.5)
P 		748
B 2887.1
(-1.2)
P 		3681
(2.8)
P 		3722.1
(3)
P 		2538
(-3)
P 		1184
C 3063.6
(0.2)
P 		3568.7
(3)
P 		3263.3
(1.3)
P 		2504.3
(-3)
P 		1064
avr 2917.6
(-1.2) 		3600
(3) 		3447.6
(2.1) 		2636.5
(-3) 		964

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2283
1 2 3 4 5 6 range
A 3541.8
(0.6)
P 		3403.9
(0.3)
P 		4442.7
(3)
P 		3800.8
(1.3)
P 		2159.7
(-3)
P 		2367.3
(-2.5)
P 		2283
B 3086.3
(0.1)
P 		3328.6
(1.3)
P 		3663.6
(3)
P 		3018.2
(-0.2)
P 		2622.9
(-2.2)
P 		2471.5
(-3)
P 		1192
C 3261.2
(0.5)
P 		3253
(0.4)
P 		3611.1
(3)
P 		3305.1
(0.8)
P 		2937.7
(-1.9)
P 		2782
(-3)
P 		829
avr 3296.4
(0.3) 		3328.5
(0.5) 		3905.8
(3) 		3374.7
(0.7) 		2573.4
(-2.9) 		2540.3
(-3) 		1366
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 718
1 2 3 4 range
A 1020.3
(3)
P 		770.7
(0.5)
P 		877.7
(1.6)
P 		419.7
(-3)
P 		601
B 920.7
(3)
P 		909.1
(2.8)
P 		862.5
(2.1)
P 		540.8
(-3)
P 		380
C 1014.1
(2)
P 		1026
(2.1)
P 		1137.4
(3)
P 		422.3
(-3)
P 		715
avr 985
(3) 		901.9
(2) 		959.2
(2.7) 		460.9
(-3) 		524

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 634
1 2 3 4 5 6 range
A 652.9
(-2.3)
P 		1210.6
(3)
P 		967.5
(0.7)
P 		964
(0.7)
P 		651.7
(-2.3)
P 		576.4
(-3)
P 		634
B 1073.9
(2.3)
P 		1108
(3)
P 		889.6
(-1.2)
P 		799.4
(-3)
P 		1065.7
(2.2)
P 		921.6
(-0.6)
P 		309
C 1208.8
(3)
P 		992.6
(0.6)
P 		919.1
(-0.2)
P 		664.7
(-3)
P 		950.6
(0.2)
P 		931.3
(-0.1)
P 		544
avr 978.5
(0.4) 		1103.7
(3) 		925.4
(-0.6) 		809.4
(-3) 		889.3
(-1.4) 		809.8
(-3) 		294
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184979_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4222
Sequence Type Exemplar sequence
Representative Public ID F45E12.4 NCBI
Target Description F45E12.4 /REP_DB=WormBase Gene ID /WP=CE02740 /TR=Q20430 /GB=AAA68795.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063126(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063126 NCBI Caenorhabditis elegans F45E12.5b (F45E12.5) mRNA, complete cds. 11/11 None
SNAP00000037597 ENSEMBL cdna:SNAP chromosome:CEL140:II:7303107:7309136:-1 11/11 None
GENEFINDER00000037603 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7308698:7310033:-1 11/11 None
F45E12.5b ENSEMBL cdna:known chromosome:CEL140:II:7308675:7310044:-1 gene:F45E12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
185803 2 1 NM_063126 184979_at (11)
NM_063127 186414_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7308694-7309133(-) 100.0 100.0
Public Domain and Genome References
Ensembl F45E12.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68792 Hypothetical protein F45E12.5a [Caenorhabditis elegans] ref|NP_495528.1| F45E12.5a [Caenorhabditis elegans] 1.0E-108
blast AAA68795 Hypothetical protein F45E12.5b [Caenorhabditis elegans] ref|NP_495527.2| F45E12.5b [Caenorhabditis elegans] 1.0E-100
blast CAE67593 Hypothetical protein CBG13135 [Caenorhabditis briggsae] 2.0E-91
blast AAA68795 Hypothetical protein F45E12.5b [Caenorhabditis elegans] ref|NP_495527.2| F45E12.5b [Caenorhabditis elegans] 1.0E-76
blast AAA68795 Hypothetical protein F45E12.5b [Caenorhabditis elegans] ref|NP_495527.2| F45E12.5b [Caenorhabditis elegans] 3.0E-68
blast CAE67592 Hypothetical protein CBG13134 [Caenorhabditis briggsae] 1.0E-67
blast CAE67592 Hypothetical protein CBG13134 [Caenorhabditis briggsae] 1.0E-66
blast NP_115487 mitochondrial ribosomal protein L14 [Homo sapiens] gb|AAH65005.1| Mitochondrial ribosomal protein L14 [Homo sapiens] emb|CAI19245.1| OTTHUMP00000016500 [Homo sapiens] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:184979_AT
aatccaccgaagaacacgcctgaatgttgttgataactctgctctcggaaaagaagcaga
tacgactggaaaactaccgtactgcattcacgtatacaagcaaggaagacgagccaagca
tatgccacacgcagaactcggtgacaagattctcgttgccatccgtggacaaatgcgaaa
agcttacgtggtcggtgcaaatacgcacgtccactaccgaaaacatggagttccagttac
tgatcagaatatgattgtgcttctcgatgaagaaggaaatccactcggaaaccgaatcac
cgctcccattcccacaaaactcatggccaatcgtggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCACCGAAGAACACGCCTGAAT 579 167 18 Antisense
TGTTGTTGATAACTCTGCTCTCGGA 470 563 42 Antisense
ACTACCGTACTGCATTCACGTATAC 548 101 90 Antisense
AGACGAGCCAAGCATATGCCACACG 324 71 124 Antisense
ATGCCACACGCAGAACTCGGTGACA 391 41 139 Antisense
GGTGACAAGATTCTCGTTGCCATCC 262 501 157 Antisense
TTCTCGTTGCCATCCGTGGACAAAT 543 691 167 Antisense
GCGAAAAGCTTACGTGGTCGGTGCA 147 243 192 Antisense
GGTCGGTGCAAATACGCACGTCCAC 51 503 207 Antisense
CGCACGTCCACTACCGAAAACATGG 184 255 221 Antisense
ACAAAACTCATGGCCAATCGTGGAA 541 111 331 Antisense
Sequence Source Affymetrix Proprietary Database