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[184977_at]

Description T24E12.3 /REP_DB=WormBase Gene ID /WP=CE17261 /TR=O44882 /GB=AAB95038.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 13.4
(3)
A 		3.4
(-2.8)
A 		3.1
(-3)
A 		4.1
(-2.4)
A 		10
B 4
(3)
A 		3.5
(0.3)
A 		2.9
(-3)
A 		3.4
(-0.3)
A 		1
C 2.3
(-3)
A 		3.4
(1.7)
A 		3.1
(0.4)
A 		3.7
(3)
A 		1
avr 6.6
(3) 		3.4
(-2.3) 		3
(-3) 		3.7
(-1.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 14.7
(2.3)
A 		3.7
(-2.4)
A 		6.5
(-1.2)
A 		3.6
(-2.4)
A 		16.4
(3)
A 		2.2
(-3)
A 		14
B 5.5
(-0.3)
A 		4.1
(-1.4)
A 		5.1
(-0.6)
A 		9.6
(3)
A 		2.1
(-3)
A 		4.5
(-1.1)
A 		8
C 3.2
(-2)
A 		6.1
(3)
A 		2.6
(-3)
A 		4.7
(0.6)
A 		3.1
(-2.1)
A 		4.9
(0.9)
A 		4
avr 7.8
(3) 		4.6
(-1.9) 		4.7
(-1.8) 		6
(0.2) 		7.2
(2.1) 		3.9
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 4.9
(3)
A 		0.7
(-2.9)
A 		0.8
(-2.7)
A 		0.6
(-3)
A 		4
B 1.3
(3)
A 		0.9
(-1)
A 		0.7
(-3)
A 		0.7
(-3)
A 		1
C 0.8
(-0.6)
A 		1
(1.8)
A 		1.1
(3)
A 		0.6
(-3)
A 		1
avr 2.3
(3) 		0.9
(-1.9) 		0.9
(-1.9) 		0.6
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2.7
(0)
A 		1.3
(-1.9)
A 		1.4
(-1.8)
A 		0.9
(-2.5)
A 		4.9
(3)
A 		0.5
(-3)
A 		4
B 1.9
(0.9)
A 		1.4
(-0.9)
A 		1.2
(-1.6)
A 		2.5
(3)
A 		0.8
(-3)
A 		1.7
(0.2)
A 		2
C 1.2
(-0.5)
A 		1.9
(3)
A 		0.7
(-3)
A 		0.9
(-2)
A 		1
(-1.5)
A 		1.6
(1.5)
A 		1
avr 1.9
(1.4) 		1.5
(-0.8) 		1.1
(-3) 		1.4
(-1.4) 		2.2
(3) 		1.3
(-1.9) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184977_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5558
Sequence Type Exemplar sequence
Representative Public ID T24E12.3 NCBI
Target Description T24E12.3 /REP_DB=WormBase Gene ID /WP=CE17261 /TR=O44882 /GB=AAB95038.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062246(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062246 NCBI Caenorhabditis elegans T24E12.3 (T24E12.3) mRNA, complete cds. 11/11 None
SNAP00000005575 ENSEMBL cdna:SNAP chromosome:CEL140:II:3776013:3777005:1 9/11 None
GENEFINDER00000005580 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3776013:3777453:1 11/11 None
T24E12.3 ENSEMBL cdna:known chromosome:CEL140:II:3776013:3777453:1 gene:T24E12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3776011-3777452(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24E12.3
Entrez Gene 188862 Entrez gene
SwissProt O44882 EMBL-EBI
WormBase CE17261 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95038 Hypothetical protein T24E12.3 [Caenorhabditis elegans] ref|NP_494647.1| T24E12.3 [Caenorhabditis elegans] 1.0E-156
blast AAB95038 Hypothetical protein T24E12.3 [Caenorhabditis elegans] ref|NP_494647.1| T24E12.3 [Caenorhabditis elegans] 9.0E-99
Sequence
Target Sequence 
>C. ELEGANS:184977_AT
tcaagttggttccttcgactgattcgaatttttctccggttcttcaggctgaagctctcc
aagaagttgcagcaacttcaacagaagctttggattgtgcttctgcaatgtcgcaaccag
ttcaatcattcaatgagcaaactaattggatttcatggaattggaactcacagtcagaat
ctcgattaaagccagctcctgaacctgagctcagtccggcatatacagaagcttcagcaa
tttcgggtgcctattcagaaaccgcccggcttcccactacttccacaactataaaaaggt
ccaggaaaaggaaagatccaagaaaaatcgttccggattccattgtcaaaactcaaaaac
gctctccccgaaaagctcccagtttcgatgtatgcgggatgagctcatcgaaaatattcg
atttatggtgtgctggccaaggatttggttctatgcaggagacactgcagaagtttctta
ataatcaggaaaaacttaatgaagatcaagaaaaaataaaaaatgacaaagagagagata
gcatttctcaagtcgagaattcagatgggtctagtgagagtgggctggctgactattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGTTGGTTCCTTCGACTGATTC 618 631 251 Antisense
TTTCTCCGGTTCTTCAGGCTGAAGC 108 671 281 Antisense
TTGTGCTTCTGCAATGTCGCAACCA 167 705 345 Antisense
GTCGCAACCAGTTCAATCATTCAAT 213 475 360 Antisense
GAATCTCGATTAAAGCCAGCTCCTG 258 329 427 Antisense
AAAGCCAGCTCCTGAACCTGAGCTC 670 123 438 Antisense
TGAGCTCAGTCCGGCATATACAGAA 350 569 456 Antisense
TTCGGGTGCCTATTCAGAAACCGCC 167 695 492 Antisense
AAATCGTTCCGGATTCCATTGTCAA 383 115 575 Antisense
AAGCTCCCAGTTTCGATGTATGCGG 645 149 623 Antisense
GTGAGAGTGGGCTGGCTGACTATTC 531 481 824 Antisense
Sequence Source Affymetrix Proprietary Database