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[184976_s_at]

Description Y73C8B.2 /REP_DB=WormBase Gene ID /WP=CE24640 /TR=Q9N4E1 /GB=AAF36045.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 10      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 71      6grp_total > 50      4grp_total > 24      6grp_highest_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 296.1
(-3)
P 		320.4
(-2.1)
P 		452.5
(3)
P 		453.6
(3)
P 		158
B 298.6
(-3)
P 		325.7
(-1.2)
P 		356.3
(0.8)
P 		388.8
(3)
P 		90
C 283.3
(-3)
P 		336.4
(-0.6)
P 		408.9
(2.8)
P 		413.7
(3)
P 		130
avr 292.7
(-3) 		327.5
(-1.3) 		405.9
(2.4) 		418.7
(3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 437.6
(3)
P 		328.1
(-0.4)
P 		380.2
(1.2)
P 		416.1
(2.3)
P 		245
(-3)
P 		274.4
(-2.1)
P 		193
B 426.6
(3)
P 		373
(1)
P 		326.1
(-0.7)
P 		421
(2.8)
P 		262.6
(-3)
P 		299.8
(-1.6)
P 		164
C 345.1
(-0.7)
P 		427.9
(1.3)
P 		421.2
(1.2)
P 		496.8
(3)
P 		251.3
(-3)
P 		314.2
(-1.5)
P 		246
avr 403.1
(1.7) 		376.3
(0.9) 		375.8
(0.8) 		444.6
(3) 		253
(-3) 		296.1
(-1.7) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 107.8
(1.8)
P 		69.5
(-2.6)
P 		118.3
(3)
P 		66.4
(-3)
P 		52
B 95.2
(3)
P 		80.4
(-3)
P 		82.6
(-2.1)
P 		82.9
(-2)
P 		15
C 93.8
(-1)
P 		96.7
(-0.8)
P 		142.5
(3)
P 		69.8
(-3)
P 		73
avr 98.9
(0.7) 		82.2
(-1.7) 		114.5
(3) 		73
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 80.7
(-1.3)
P 		116.7
(3)
P 		82.8
(-1.1)
P 		105.5
(1.7)
P 		73.9
(-2.1)
P 		66.8
(-3)
P 		50
B 148.5
(3)
P 		124.1
(0.9)
P 		79.2
(-3)
P 		111.5
(-0.2)
P 		106.7
(-0.6)
P 		111.8
(-0.2)
P 		69
C 127.9
(2.7)
P 		130.6
(3)
P 		107.2
(0.2)
P 		99.9
(-0.7)
P 		81.3
(-3)
P 		105.2
(-0.1)
P 		49
avr 119
(2.2) 		123.8
(3) 		89.7
(-2.6) 		105.6
(0) 		87.3
(-3) 		94.6
(-1.8) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184976_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14983
Sequence Type Exemplar sequence
Representative Public ID Y73C8B.2 NCBI
Target Description Y73C8B.2 /REP_DB=WormBase Gene ID /WP=CE24640 /TR=Q9N4E1 /GB=AAF36045.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071478(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071478 NCBI Caenorhabditis elegans Y73C8B.2 (Y73C8B.2) mRNA, complete cds. 11/11 None
SNAP00000021842 ENSEMBL cdna:SNAP chromosome:CEL140:V:3193296:3194828:-1 11/11 None
GENEFINDER00000021851 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3191039:3194828:-1 11/11 None
Y73C8B.2 ENSEMBL cdna:known chromosome:CEL140:V:3193221:3194829:-1 gene:Y73C8B.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3193295-3194828(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73C8B.2
Entrez Gene 178757 Entrez gene
SwissProt Q9N4E1 EMBL-EBI
WormBase CE24640 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36046 Hypothetical protein Y73C8B.3 [Caenorhabditis elegans] ref|NP_503878.1| Y73C8B.3 [Caenorhabditis elegans] 1.0E-170
blast AAF36045 Hypothetical protein Y73C8B.2 [Caenorhabditis elegans] ref|NP_503879.1| Y73C8B.2 [Caenorhabditis elegans] 1.0E-169
blast AAF36045 Hypothetical protein Y73C8B.2 [Caenorhabditis elegans] ref|NP_503879.1| Y73C8B.2 [Caenorhabditis elegans] 1.0E-167
blast CAE74186 Hypothetical protein CBG21859 [Caenorhabditis briggsae] 1.0E-128
blast CAE74185 Hypothetical protein CBG21858 [Caenorhabditis briggsae] 1.0E-121
blast AAF36046 Hypothetical protein Y73C8B.3 [Caenorhabditis elegans] ref|NP_503878.1| Y73C8B.3 [Caenorhabditis elegans] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:184976_S_AT
caaaacttctccaacgctttgctagatgagctgaaaatcgacggaaaaattatctacatg
ggacacagtcgtggatgcgagaatgctctgcaaacagccgtcggacgtgaagctcacggt
cttgtgctcataaatccgaccgggttcagacatcatcagggcattaggccattttatagg
ctggagtatttggactggatgtatgggcttttgccaagttttttgggaaattcgatgatt
ttaggaatctacaaagctatcggcttcaaagtgaaatctggagaggaggccatgtgcgca
atgcggtccgtgatgaggatgtcgctggaagatcaaattgagtacattgagaagttgaat
cagaagcataccaaaaaactaatcgtcttcggcggaaacgaccacttggtagaagaagaa
attgtcctagagaaattggagaaacatgacggtttggagcattttagatttgaagatgga
atttctgaagaggaaaagtcaaaaattatggaatgttttacgggaaatcaacttggtgca
tcagttttcgtggcgaaggacacccattttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAACTTCTCCAACGCTTTGCTAG 463 191 310 Antisense
GAGAATGCTCTGCAAACAGCCGTCG 566 391 388 Antisense
AAGCTCACGGTCTTGTGCTCATAAA 253 151 419 Antisense
TGTGCTCATAAATCCGACCGGGTTC 152 543 432 Antisense
GACCGGGTTCAGACATCATCAGGGC 199 383 447 Antisense
TGGACTGGATGTATGGGCTTTTGCC 191 549 500 Antisense
CCATGTGCGCAATGCGGTCCGTGAT 615 271 599 Antisense
GGTCCGTGATGAGGATGTCGCTGGA 686 501 614 Antisense
ATCGTCTTCGGCGGAAACGACCACT 690 33 691 Antisense
TTGGTGCATCAGTTTTCGTGGCGAA 411 709 842 Antisense
TCGTGGCGAAGGACACCCATTTTCA 280 603 857 Antisense
Sequence Source Affymetrix Proprietary Database