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[184974_at]

Description Y38C9B.3 /REP_DB=WormBase Gene ID /WP=CE24220 /TR=Q9N524 /GB=AAF60507.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 57.4
(-3)
A 		89.6
(0.1)
A 		69.6
(-1.8)
A 		118.9
(3)
P 		62
B 53.6
(2)
A 		59.8
(3)
A 		24.2
(-3)
A 		37.1
(-0.8)
A 		36
C 41.9
(-1)
P 		9.9
(-3)
A 		27.4
(-1.9)
A 		107.7
(3)
P 		98
avr 51
(-1.7) 		53.1
(-1.4) 		40.4
(-3) 		87.9
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 103.2
(3)
M 		15.1
(-3)
A 		52.9
(-0.4)
A 		56.8
(-0.2)
A 		34
(-1.7)
A 		64.6
(0.4)
A 		88
B 35.8
(-0.3)
A 		55
(3)
A 		28.9
(-1.5)
A 		38.5
(0.1)
A 		33.6
(-0.7)
A 		20.4
(-3)
A 		35
C 26
(-3)
A 		73.2
(2.8)
A 		29.3
(-2.6)
A 		75.1
(3)
M 		43.7
(-0.8)
P 		31.3
(-2.4)
A 		49
avr 55
(2.5) 		47.8
(0.3) 		37
(-3) 		56.8
(3) 		37.1
(-3) 		38.8
(-2.5) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 20.9
(3)
A 		19.4
(0.4)
A 		18.2
(-1.6)
A 		17.4
(-3)
P 		4
B 17.1
(3)
A 		14.8
(1.8)
A 		5.6
(-3)
A 		7.9
(-1.8)
A 		12
C 13.9
(1.3)
P 		2.8
(-3)
A 		9.5
(-0.4)
A 		18.2
(3)
P 		15
avr 17.3
(3) 		12.3
(-1.8) 		11.1
(-3) 		14.5
(0.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 19
(3)
M 		5.4
(-3)
A 		11.5
(-0.3)
A 		14.4
(1)
A 		10.3
(-0.8)
A 		15.7
(1.5)
A 		14
B 12.4
(-0.1)
A 		18.3
(3)
A 		7
(-3)
A 		10.2
(-1.3)
A 		13.6
(0.5)
A 		7.6
(-2.7)
A 		11
C 9.6
(-2.1)
A 		22.3
(3)
A 		7.5
(-3)
A 		15.1
(0.1)
M 		14.2
(-0.3)
P 		10.5
(-1.8)
A 		15
avr 13.7
(1.5) 		15.3
(3) 		8.7
(-3) 		13.2
(1.1) 		12.7
(0.6) 		11.3
(-0.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184974_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14978
Sequence Type Exemplar sequence
Representative Public ID Y38C9B.3 NCBI
Target Description Y38C9B.3 /REP_DB=WormBase Gene ID /WP=CE24220 /TR=Q9N524 /GB=AAF60507.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070730(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070730 NCBI Caenorhabditis elegans Y38C9B.3 (Y38C9B.3) mRNA, complete cds. 11/11 None
Y38C9B.3 ENSEMBL cdna:known chromosome:CEL140:V:63554:64331:-1 gene:Y38C9B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:63553-64331(-) 83.73 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38C9B.3
Entrez Gene 189651 Entrez gene
SwissProt Q9N524 EMBL-EBI
WormBase CE24220 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503131 Y38C9B.3 [Caenorhabditis elegans] gb|AAF60507.1| Hypothetical protein Y38C9B.3 [Caenorhabditis elegans] 1.0E-67
blast NP_503645 F15E11.4 [Caenorhabditis elegans] gb|AAB94201.1| Hypothetical protein F15E11.4 [Caenorhabditis elegans] 2.0E-22
blast CAB03430 Hypothetical protein T26E4.1 [Caenorhabditis elegans] ref|NP_506931.1| T26E4.1 [Caenorhabditis elegans] 1.0E-12
Sequence
Target Sequence 
>C. ELEGANS:184974_AT
aagtgaccataccagcaataaccgtcgaaaacaacccagggttgttggacatcaactttc
caagtttaaagtttgcccaatcgatcgctcttcgtgcaattatattcatgaacaacagtc
aagctctatcagcagattcacattattgcgataaacttcagaatacactcaacctaactg
cttcccaatctccgttttttgatggaaaacaatgccatgatctcccgaaatattctctga
agatctccggatttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGACCATACCAGCAATAACCGT 368 159 107 Antisense
GCAATAACCGTCGAAAACAACCCAG 195 313 121 Antisense
AGGGTTGTTGGACATCAACTTTCCA 51 55 144 Antisense
TTAAAGTTTGCCCAATCGATCGCTC 46 683 172 Antisense
GATCGCTCTTCGTGCAATTATATTC 134 417 189 Antisense
GAACAACAGTCAAGCTCTATCAGCA 213 353 216 Antisense
AGCTCTATCAGCAGATTCACATTAT 115 81 228 Antisense
GAATACACTCAACCTAACTGCTTCC 86 327 267 Antisense
CTTCCCAATCTCCGTTTTTTGATGG 646 219 287 Antisense
ACAATGCCATGATCTCCCGAAATAT 104 115 315 Antisense
TTCTCTGAAGATCTCCGGATTTCTG 455 689 339 Antisense
Sequence Source Affymetrix Proprietary Database