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[184973_at]

Description C34D4.13 /REP_DB=WormBase Gene ID /WP=CE17507 /TR=Q18446 /GB=AAB00698.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 85      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 72      6grp_total > 65      4grp_total > 16      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 315.8
(-1.7)
P 		288.4
(-3)
P 		327.2
(-1.1)
P 		414.1
(3)
P 		126
B 289.4
(-3)
P 		334.9
(-1.5)
P 		407.5
(0.9)
P 		472.5
(3)
P 		183
C 283.6
(-3)
P 		343.5
(-0.8)
P 		388.5
(0.8)
P 		449.6
(3)
P 		166
avr 296.3
(-3) 		322.3
(-2) 		374.4
(0.1) 		445.4
(3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 238.6
(-3)
P 		463.7
(1.5)
P 		536.7
(3)
P 		523.3
(2.7)
P 		406.2
(0.4)
P 		439.8
(1)
P 		298
B 343.6
(-3)
P 		566.2
(2.7)
P 		579.3
(3)
P 		359.6
(-2.6)
P 		486.2
(0.6)
P 		547.5
(2.2)
P 		236
C 352
(-2.9)
P 		475.3
(-0.4)
P 		346.3
(-3)
P 		457.5
(-0.7)
P 		491.8
(-0)
P 		641.9
(3)
P 		296
avr 311.4
(-3) 		501.7
(1.9) 		487.4
(1.6) 		446.8
(0.5) 		461.4
(0.9) 		543.1
(3) 		232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 115
(3)
P 		62.6
(-2.8)
P 		85.5
(-0.3)
P 		60.6
(-3)
P 		54
B 92.3
(0.2)
P 		82.7
(-3)
P 		94.4
(0.9)
P 		100.7
(3)
P 		18
C 93.9
(-1.2)
P 		98.7
(-0.7)
P 		135.4
(3)
P 		75.8
(-3)
P 		60
avr 100.4
(1.9) 		81.3
(-2.5) 		105.1
(3) 		79
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 44
(-3)
P 		164.9
(3)
P 		116.9
(0.6)
P 		132.7
(1.4)
P 		122.6
(0.9)
P 		107.1
(0.1)
P 		121
B 119.5
(-1.7)
P 		188.5
(2.1)
P 		140.7
(-0.5)
P 		95.2
(-3)
P 		197.5
(2.6)
P 		204.2
(3)
P 		109
C 130.5
(-1)
P 		145
(-0.3)
P 		88.1
(-3)
P 		92
(-2.8)
P 		159.1
(0.4)
P 		214.9
(3)
P 		127
avr 98
(-3) 		166.1
(2.3) 		115.2
(-1.7) 		106.6
(-2.3) 		159.7
(1.8) 		175.4
(3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184973_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8922
Sequence Type Exemplar sequence
Representative Public ID C34D4.13 NCBI
Target Description C34D4.13 /REP_DB=WormBase Gene ID /WP=CE17507 /TR=Q18446 /GB=AAB00698.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068718(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068718 NCBI Caenorhabditis elegans C34D4.13 (C34D4.13) mRNA, complete cds. 10/11 None
SNAP00000003801 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7133569:7134057:-1 10/11 None
GENEFINDER00000003819 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7133569:7134057:-1 11/11 None
C34D4.13 ENSEMBL cdna:known chromosome:CEL140:IV:7133569:7134057:-1 gene:C34D4.13 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7133574-7134063(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34D4.13
Entrez Gene 183210 Entrez gene
SwissProt Q18446 EMBL-EBI
WormBase CE34735 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00698 Hypothetical protein C34D4.13 [Caenorhabditis elegans] ref|NP_501119.2| C34D4.13 [Caenorhabditis elegans] 5.0E-59
blast AAB00698 Hypothetical protein C34D4.13 [Caenorhabditis elegans] ref|NP_501119.2| C34D4.13 [Caenorhabditis elegans] 4.0E-57
blast CAE61811 Hypothetical protein CBG05778 [Caenorhabditis briggsae] 5.0E-46
blast CAE61811 Hypothetical protein CBG05778 [Caenorhabditis briggsae] 3.0E-44
Sequence
Target Sequence 
>C. ELEGANS:184973_AT
ggcgactattccatcagtggttcgtgagattacacttgttggcgagcaaatttttgatca
cactcaagttcgtgcagaaatcgacagatttgttgaacgattcgaacggaatgaacgtca
tcgcgagtttgatggcattcttcgagcaagtcatgctcttgtcgaatcttcagaaactcc
cgttgagggactatttgatatgggaaaaatggaacatatgacacaatgcgtggacgatat
tactaaaaaactgcaaacactcgttgagcccaaatatcagaaggaacacgatgtctactt
ggaaaaagtgaaagaagatcagaagaagtatgtcgacgtttgtcgcgagcaagcaatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGACTATTCCATCAGTGGTTCGT 594 539 15 Antisense
GTGAGATTACACTTGTTGGCGAGCA 462 483 38 Antisense
TGATCACACTCAAGTTCGTGCAGAA 531 565 69 Antisense
GAATGAACGTCATCGCGAGTTTGAT 352 331 123 Antisense
GATGGCATTCTTCGAGCAAGTCATG 161 407 145 Antisense
AAGTCATGCTCTTGTCGAATCTTCA 613 157 162 Antisense
GAATCTTCAGAAACTCCCGTTGAGG 341 327 178 Antisense
ACACTCGTTGAGCCCAAATATCAGA 221 111 271 Antisense
GAAGGAACACGATGTCTACTTGGAA 520 333 294 Antisense
GAAGAAGTATGTCGACGTTTGTCGC 87 341 336 Antisense
GACGTTTGTCGCGAGCAAGCAATGA 495 377 349 Antisense
Sequence Source Affymetrix Proprietary Database