[Home] | [Total List]

[184972_at]

Description Y52B11A.7 /REP_DB=WormBase Gene ID /WP=CE20295 /TR=Q9U257 /GB=CAB63389.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 21.9
(-0.5)
A 		5.3
(-3)
A 		7.5
(-2.7)
A 		45.6
(3)
A 		40
B 4.7
(-2.9)
A 		13
(-1)
A 		4.3
(-3)
A 		29.8
(3)
A 		26
C 26.4
(0.2)
A 		7.8
(-2.3)
A 		2.1
(-3)
A 		47.9
(3)
A 		46
avr 17.7
(-0.8) 		8.7
(-2.3) 		4.6
(-3) 		41.1
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 13
(-0.4)
A 		2.9
(-3)
A 		4.2
(-2.7)
A 		22.1
(2)
A 		26.1
(3)
A 		7.3
(-1.9)
A 		23
B 22.5
(3)
A 		4.9
(-2.1)
A 		7.5
(-1.3)
A 		6.6
(-1.6)
A 		1.8
(-3)
A 		4.4
(-2.2)
A 		21
C 6.6
(-2.6)
A 		3.9
(-2.9)
A 		3.4
(-3)
A 		49.8
(3)
A 		20.1
(-0.8)
A 		21.6
(-0.6)
A 		46
avr 14
(-0.3) 		3.9
(-3) 		5
(-2.7) 		26.2
(3) 		16
(0.3) 		11.1
(-1.1) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 8
(3)
A 		1.2
(-3)
A 		2
(-2.3)
A 		6.7
(1.9)
A 		7
B 1.5
(-2.4)
A 		3.2
(-0.5)
A 		1
(-3)
A 		6.3
(3)
A 		5
C 8.7
(3)
A 		2.2
(-1.9)
A 		0.7
(-3)
A 		8.1
(2.6)
A 		8
avr 6.1
(2.1) 		2.2
(-2) 		1.2
(-3) 		7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.4
(-1.7)
A 		1
(-2.9)
A 		0.9
(-3)
A 		5.6
(1)
A 		7.9
(3)
A 		1.8
(-2.2)
A 		7
B 7.8
(3)
A 		1.6
(-2.2)
A 		1.8
(-2.1)
A 		1.7
(-2.2)
A 		0.7
(-3)
A 		1.6
(-2.2)
A 		7
C 2.5
(-1.9)
A 		1.2
(-2.8)
A 		0.9
(-3)
A 		10
(3)
A 		6.5
(0.7)
A 		7.2
(1.2)
A 		9
avr 4.2
(0.9) 		1.3
(-2.9) 		1.2
(-3) 		5.8
(3) 		5
(2) 		3.5
(0) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184972_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1366
Sequence Type Exemplar sequence
Representative Public ID Y52B11A.7 NCBI
Target Description Y52B11A.7 /REP_DB=WormBase Gene ID /WP=CE20295 /TR=Q9U257 /GB=CAB63389.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060457(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060457 NCBI Caenorhabditis elegans Y52B11A.7 (Y52B11A.7) mRNA, complete cds. 10/11 None
SNAP00000015590 ENSEMBL cdna:SNAP chromosome:CEL140:I:11022797:11033676:-1 10/11 None
GENEFINDER00000015603 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11026835:11036446:-1 10/11 None
Y52B11A.7 ENSEMBL cdna:known chromosome:CEL140:I:11026696:11033778:-1 gene:Y52B11A.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11027775-11033709(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y52B11A.7
Entrez Gene 190183 Entrez gene
SwissProt Q9U257 EMBL-EBI
WormBase CE37570 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63389 Hypothetical protein Y52B11A.7 [Caenorhabditis elegans] ref|NP_492858.2| Y52B11A.7 [Caenorhabditis elegans] 0.0
blast CAE73323 Hypothetical protein CBG20752 [Caenorhabditis briggsae] 1.0E-113
blast CAI46577 Hypothetical protein W02B8.6 [Caenorhabditis elegans] ref|NP_001022392.1| W02B8.6 [Caenorhabditis elegans] 1.0E-113
blast CAE73322 Hypothetical protein CBG20751 [Caenorhabditis briggsae] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.6E-9
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.6E-9
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.6E-9
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492858.2 4 381-403,410-432,452-474,481-503
Y52B11A.7 4 381-403,410-432,452-474,481-503
SNAP00000015590 5 369-391,401-423,430-447,451-473,480-502
Sequence
Target Sequence 
>C. ELEGANS:184972_AT
aaatcacaggggtcgcggatacggtagatgaagctgcacagaaagcgtttaaggactcag
agggtacacttattaatggaaaaggagaggagattaatgttagcaaagaaaacttcacga
aaatttacggagaggataattaccgaaaaatgaaagttttggagcaattgcatgggatgt
atactgacgagcagatggctcatttcaacaaatccggctatgcaatcatgacggataagc
aaagagaaatgatgtatggaagtgggtcaccatttgacaataaaatgacgttggaagctg
gtcgaaacctgacaatgccaaaggctcggagagcattgcatactgtgatcaaagaaattg
gaaaaggaaatactaaagttggaaaatacgaaaaacggatgaaggatattgtcggatcac
ctctacttttcacaagtatcgttgcttctccagctactgcatcacaagcattaatcctat
caccggtgttgttcacctcactgatcttatcacctgctatctatggatctgttattttgt
cgccatgggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCACAGGGGTCGCGGATACGGT 114 115 653 Antisense
GATGGCTCATTTCAACAAATCCGGC 666 405 846 Antisense
AGCTGGTCGAAACCTGACAATGCCA 362 79 948 Antisense
GGCTCGGAGAGCATTGCATACTGTG 99 539 975 Antisense
ATATTGTCGGATCACCTCTACTTTT 383 19 1058 Antisense
TTCACAAGTATCGTTGCTTCTCCAG 26 687 1081 Antisense
CTTCTCCAGCTACTGCATCACAAGC 209 221 1097 Antisense
AATCCTATCACCGGTGTTGTTCACC 492 167 1125 Antisense
TTGTTCACCTCACTGATCTTATCAC 379 707 1141 Antisense
GATCTTATCACCTGCTATCTATGGA 543 417 1155 Antisense
ATCTGTTATTTTGTCGCCATGGGTA 72 33 1179 Antisense
Sequence Source Affymetrix Proprietary Database