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[184971_at]

Description C46E10.1 /REP_DB=WormBase Gene ID /WP=CE08759 /TR=O44718 /GB=AAB96686.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 26      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 75.5
(-3)
A 		153.2
(0.9)
A 		120.2
(-0.8)
A 		195.2
(3)
A 		120
B 61.4
(-3)
A 		97.7
(2.1)
A 		69.6
(-1.8)
A 		103.9
(3)
A 		43
C 111
(0.2)
A 		103.4
(-0.3)
A 		62.2
(-3)
A 		155.1
(3)
A 		93
avr 82.6
(-3) 		118.1
(0.1) 		84
(-2.9) 		151.4
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 74
(-2)
A 		65.7
(-2.2)
A 		42.7
(-3)
A 		97.8
(-1.2)
A 		134.1
(0.1)
A 		222
(3)
P 		179
B 73.7
(-2.3)
A 		58.8
(-3)
A 		68.8
(-2.5)
A 		79.7
(-2)
A 		165.4
(2.2)
A 		182.2
(3)
P 		123
C 106.9
(-0.6)
A 		83
(-1.8)
A 		60.5
(-3)
A 		96.8
(-1.1)
A 		163.7
(2.4)
A 		174.8
(3)
P 		114
avr 84.9
(-1.8) 		69.2
(-2.5) 		57.3
(-3) 		91.4
(-1.5) 		154.4
(1.3) 		193
(3) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 27.5
(-3)
A 		33.2
(3)
A 		31.4
(1.1)
A 		28.6
(-1.8)
A 		6
B 19.6
(-0.4)
A 		24.1
(3)
A 		16.1
(-3)
A 		22.1
(1.5)
A 		8
C 36.7
(3)
A 		29.7
(0.2)
A 		21.7
(-3)
A 		26.2
(-1.2)
A 		15
avr 27.9
(1.9) 		29
(3) 		23.1
(-3) 		25.6
(-0.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 13.6
(-2.4)
A 		23.4
(-1.1)
A 		9.3
(-3)
A 		24.8
(-0.9)
A 		40.5
(1.2)
A 		54.1
(3)
P 		45
B 25.6
(-2)
A 		19.6
(-2.7)
A 		16.7
(-3)
A 		21.1
(-2.5)
A 		67.2
(2.9)
A 		67.9
(3)
P 		51
C 39.6
(0.4)
A 		25.3
(-1.6)
A 		15.4
(-3)
A 		19.5
(-2.4)
A 		53
(2.2)
A 		58.5
(3)
P 		43
avr 26.3
(-1.4) 		22.8
(-1.8) 		13.8
(-3) 		21.8
(-2) 		53.6
(2.1) 		60.2
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184971_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5435
Sequence Type Exemplar sequence
Representative Public ID C46E10.1 NCBI
Target Description C46E10.1 /REP_DB=WormBase Gene ID /WP=CE08759 /TR=O44718 /GB=AAB96686.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062230(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062230 NCBI Caenorhabditis elegans C46E10.1 (C46E10.1) mRNA, complete cds. 10/11 None
SNAP00000007036 ENSEMBL cdna:SNAP chromosome:CEL140:II:3724254:3725843:1 10/11 None
GENEFINDER00000007046 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3724254:3725843:1 10/11 None
C46E10.1 ENSEMBL cdna:known chromosome:CEL140:II:3724254:3725843:1 gene:C46E10.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3724252-3725842(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46E10.1
Entrez Gene 183505 Entrez gene
SwissProt O44718 EMBL-EBI
WormBase CE36110 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96686 Hypothetical protein C46E10.1 [Caenorhabditis elegans] ref|NP_494631.2| C46E10.1 [Caenorhabditis elegans] 1.0E-146
Sequence
Target Sequence 
>C. ELEGANS:184971_AT
gggtatgcctcagtgctaggttcaagccgaaaactatctttatttttttcagatgaattc
ctgtacaaaggcgacaagttgtacgcgagcaaggatgatcgtgagacactgttgtctgga
tttattaccaactgctcctcaccagtggacaagtctacgttctgctatgccggtgttcct
gaagtaaccggaaatattcactaccacgagacgaacaaatccgttatagccggggtgatt
agtagaagcattgagaatcgccccgaatctaatatggaggtggtggaggtcacgtatttg
cacaagtacatcaaaattctgtgtgaaatcgcaggaatttgtgaaaaacaaccaacaccg
gtgaaagaatacgcggccgacgaaacaactaccacaactcctgagccaacaacgacagta
gcagaaaccaccccagctccaataccaccacaaaagccgacacctgctgctctcggccag
aaagaggatttgacaggatgtgggacggatcgtttgtgctttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTATGCCTCAGTGCTAGGTTCAA 124 497 358 Antisense
TGGATTTATTACCAACTGCTCCTCA 88 551 474 Antisense
TGCTCCTCACCAGTGGACAAGTCTA 624 581 490 Antisense
GACAAGTCTACGTTCTGCTATGCCG 648 363 505 Antisense
GCTATGCCGGTGTTCCTGAAGTAAC 564 303 521 Antisense
AAGCATTGAGAATCGCCCCGAATCT 409 149 603 Antisense
GAATACGCGGCCGACGAAACAACTA 575 317 724 Antisense
ACAACTCCTGAGCCAACAACGACAG 111 113 751 Antisense
CAACGACAGTAGCAGAAACCACCCC 4 187 767 Antisense
TCCAATACCACCACAAAAGCCGACA 467 585 795 Antisense
GTGGGACGGATCGTTTGTGCTTTGA 36 489 857 Antisense
Sequence Source Affymetrix Proprietary Database