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[184970_s_at]

Description H05C05.2 /REP_DB=WormBase Gene ID /WP=CE19482 /TR=Q9TXU3 /GB=AAK29839.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 69      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 92      6grp_total > 59      4grp_total > 55      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 348.6
(3)
P 		189.6
(-2.7)
P 		180.7
(-3)
P 		190.9
(-2.6)
P 		168
B 383.1
(3)
P 		223.3
(-2.7)
P 		242
(-2.1)
P 		215.8
(-3)
P 		167
C 401.5
(3)
P 		335.9
(1.5)
P 		245.4
(-0.6)
P 		144.5
(-3)
P 		257
avr 377.7
(3) 		249.6
(-1) 		222.7
(-1.8) 		183.7
(-3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 366
1 2 3 4 5 6 range
A 196.8
(-3)
P 		311.7
(0.8)
P 		206.2
(-2.7)
P 		264.3
(-0.7)
P 		245.6
(-1.4)
P 		376.4
(3)
P 		180
B 260.3
(-0.4)
P 		248.8
(-0.7)
P 		146.8
(-3)
P 		212.7
(-1.5)
P 		301
(0.5)
P 		412.3
(3)
P 		266
C 512.9
(3)
P 		191.2
(-3)
P 		221.4
(-2.4)
P 		287.2
(-1.2)
P 		370.2
(0.3)
P 		424.7
(1.4)
P 		322
avr 323.3
(0.7) 		250.6
(-1.3) 		191.5
(-3) 		254.7
(-1.2) 		305.6
(0.2) 		404.5
(3) 		213
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 126.9
(3)
P 		41.1
(-2.2)
P 		47.2
(-1.8)
P 		27.9
(-3)
P 		99
B 122.2
(3)
P 		55.1
(-2.3)
P 		56.1
(-2.2)
P 		46
(-3)
P 		76
C 132.9
(3)
P 		96.6
(1)
P 		85.5
(0.4)
P 		24.4
(-3)
P 		109
avr 127.3
(3) 		64.3
(-1) 		62.9
(-1.1) 		32.8
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 36.3
(-3)
P 		110.9
(3)
P 		44.9
(-2.3)
P 		67
(-0.5)
P 		74.1
(0)
P 		91.6
(1.4)
P 		75
B 90.6
(-0.2)
P 		82.8
(-0.6)
P 		35.6
(-3)
P 		56.3
(-1.9)
P 		122.3
(1.4)
P 		153.8
(3)
P 		118
C 190.1
(3)
P 		58.3
(-2.9)
P 		56.4
(-3)
P 		57.7
(-2.9)
P 		119.8
(-0.2)
P 		142.2
(0.9)
P 		134
avr 105.7
(1.3) 		84
(-0.2) 		45.6
(-3) 		60.3
(-1.9) 		105.4
(1.3) 		129.2
(3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184970_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6145
Sequence Type Exemplar sequence
Representative Public ID H05C05.2 NCBI
Target Description H05C05.2 /REP_DB=WormBase Gene ID /WP=CE19482 /TR=Q9TXU3 /GB=AAK29839.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181960(11), NM_065243(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181960 NCBI Caenorhabditis elegans H05C05.2b (H05C05.2) mRNA, complete cds. 11/11 None
NM_065243 NCBI Caenorhabditis elegans H05C05.2a (H05C05.2) mRNA, complete cds. 11/11 None
GENEFINDER00000036244 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2962606:2965618:-1 11/11 None
SNAP00000036240 ENSEMBL cdna:SNAP chromosome:CEL140:III:2962684:2964396:-1 10/11 None
H05C05.2b.1 ENSEMBL cdna:known chromosome:CEL140:III:2962160:2965624:-1 gene:H05C05.2 11/11 None
H05C05.2b.2 ENSEMBL cdna:known chromosome:CEL140:III:2962205:2966106:-1 gene:H05C05.2 11/11 None
H05C05.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:2962606:2965624:-1 gene:H05C05.2 11/11 None
H05C05.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:2962606:2965626:-1 gene:H05C05.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2962605-2966013(-) 85.23 100.0
Public Domain and Genome References
Ensembl H05C05.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN63401 Hypothetical protein H05C05.2a [Caenorhabditis elegans] ref|NP_497644.2| H05C05.2a [Caenorhabditis elegans] 0.0
blast D88402 protein H05C05.2 [imported] - Caenorhabditis elegans 0.0
blast AAN63401 Hypothetical protein H05C05.2a [Caenorhabditis elegans] ref|NP_497644.2| H05C05.2a [Caenorhabditis elegans] 1.0E-128
blast AAN63402 Hypothetical protein H05C05.2b [Caenorhabditis elegans] ref|NP_871689.1| H05C05.2b [Caenorhabditis elegans] 1.0E-128
Sequence
Target Sequence 
>C. ELEGANS:184970_S_AT
gtcgagacaggctgcaaggctgaataagggaatgaaaatttatcgatttttcggaaaatt
tatcgatttttcagaaaatttatcgatttttcagaaaatttatcgatttttcagaaaatt
tatcgatttttctgaaaaaatttttagcgcaaaaaaccaaatttcccaacaaaaaaaatt
ccagaaactgcaaccatccacaatcaaaagttacatggaattctgtctggatagcctaat
agtcgataaacgtgtctcacatccaaccgataaattgctgaattcgaaaaagttgctcga
agagctccaagaaacaattgaggatatgggacccgtcatgaaatatgcacttcatccgat
tttggctgaaatttcaccgactatcggcaatttggatgtggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAGACAGGCTGCAAGGCTGAAT 172 473 1092 Antisense
ATGGAATTCTGTCTGGATAGCCTAA 343 53 1306 Antisense
CTGTCTGGATAGCCTAATAGTCGAT 543 235 1314 Antisense
AATAGTCGATAAACGTGTCTCACAT 333 173 1329 Antisense
GTGTCTCACATCCAACCGATAAATT 428 485 1343 Antisense
TGCTCGAAGAGCTCCAAGAAACAAT 686 579 1385 Antisense
AATTGAGGATATGGGACCCGTCATG 644 177 1407 Antisense
GGACCCGTCATGAAATATGCACTTC 606 523 1420 Antisense
ATGCACTTCATCCGATTTTGGCTGA 532 43 1436 Antisense
GGCTGAAATTTCACCGACTATCGGC 439 539 1455 Antisense
GACTATCGGCAATTTGGATGTGGTT 20 373 1470 Antisense
Sequence Source Affymetrix Proprietary Database