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[184969_at]

Description Y116A8C.9 /REP_DB=WormBase Gene ID /WP=CE28109 /TR=Q9U2T2 /GB=CAB55145.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 32.9
(-1.5)
A 		24.4
(-3)
A 		58.5
(3)
P 		26.8
(-2.6)
A 		34
B 50.2
(-0.1)
P 		51.1
(1)
A 		52.8
(3)
M 		47.7
(-3)
P 		5
C 23.6
(0.4)
A 		35.1
(2.5)
A 		38.1
(3)
P 		4.8
(-3)
A 		33
avr 35.6
(-0.6) 		36.9
(-0.3) 		49.8
(3) 		26.4
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 49.2
(3)
A 		38.1
(0.4)
P 		30.6
(-1.3)
A 		23.2
(-3)
A 		40.2
(0.9)
P 		27.9
(-1.9)
A 		26
B 24.4
(-0.1)
P 		45.5
(3)
P 		35.1
(1.5)
A 		45.7
(3)
A 		41.3
(2.4)
P 		4.6
(-3)
A 		41
C 53.6
(2.1)
P 		36.2
(-0.3)
P 		60.4
(3)
A 		52.6
(1.9)
A 		16.4
(-3)
A 		36.1
(-0.3)
A 		44
avr 42.4
(3) 		39.9
(2.2) 		42
(2.9) 		40.5
(2.4) 		32.6
(-0) 		22.9
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12
(1.3)
A 		5.3
(-2.3)
A 		15.3
(3)
P 		3.9
(-3)
A 		11
B 16
(3)
P 		12.6
(-0.5)
A 		12.2
(-0.9)
M 		10.2
(-3)
P 		6
C 7.8
(0.4)
A 		10.1
(1.5)
A 		13.3
(3)
P 		0.8
(-3)
A 		13
avr 11.9
(1.8) 		9.3
(0) 		13.6
(3) 		5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 9.1
(-0.5)
A 		13.5
(3)
P 		6.7
(-2.4)
A 		5.9
(-3)
A 		12.1
(1.9)
P 		6.8
(-2.3)
A 		8
B 8.5
(-0.3)
P 		15.1
(2.3)
P 		8.5
(-0.3)
A 		12.1
(1.1)
A 		16.8
(3)
P 		1.7
(-3)
A 		15
C 19.9
(3)
P 		11.1
(-0.6)
P 		15.4
(1.2)
A 		10.6
(-0.8)
A 		5.3
(-3)
A 		12.1
(-0.2)
A 		15
avr 12.5
(2.3) 		13.2
(3) 		10.2
(0.1) 		9.5
(-0.5) 		11.4
(1.3) 		6.9
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184969_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10075
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.9 NCBI
Target Description Y116A8C.9 /REP_DB=WormBase Gene ID /WP=CE28109 /TR=Q9U2T2 /GB=CAB55145.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070609
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000004166 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16940403:16946758:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070609 8/11 Cross Hyb Matching Probes None
SNAP00000004078 3/11 Cross Hyb Matching Probes None
Y116A8C.9 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16940408-16946764(-) 97.77 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55145 Hypothetical protein Y116A8C.9 [Caenorhabditis elegans] ref|NP_503010.1| Y116A8C.9 [Caenorhabditis elegans] 0.0
blast CAE57386 Hypothetical protein CBG00334 [Caenorhabditis briggsae] 1.0E-159
blast XP_396742 PREDICTED: similar to ENSANGP00000012038 [Apis mellifera] 1.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000004166 8 13-31,41-63,84-106,121-143,152-170,185-207,220-242,262-284
Sequence
Target Sequence 
>C. ELEGANS:184969_AT
ttacacacgtttttcgtaattccagcgctggtatgccttgtactgcttactggaaagctt
gattcgatgaattggccggataaaggatcagtatcagaattgagctatacgctcgcaatg
gctccacttcaagtatcatttttcttcatggcaatcatgtcagcaggctttggaggcccc
tcttcaacaccacaaaccaatatttggtggtttggattaaggaaacccctttgcccattt
ttattggaaaaatgtccatctctgagaacatatgctaatccagaaaacggtgaagaacgt
gaagcagtgattggtgaggagaatgaggaaagggatgaagccgatgtgggggcaattgtt
aatggaaatgaacgaagaagaaatcaaagagataaaggaagaggttccggtggatcacag
aatagtcaggagggagggcaaaatttatacgaaaaaaaatattttttttacataaaaaat
cacaaaaattccaagttttcacctaaaaaaaactacaatccatctgaacaaatagcctcc
tcatcggcagcaattatccgagcaatggctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACACACGTTTTTCGTAATTCCAG 337 681 688 Antisense
GTAATTCCAGCGCTGGTATGCCTTG 480 461 703 Antisense
GTATGCCTTGTACTGCTTACTGGAA 590 455 718 Antisense
GAGCTATACGCTCGCAATGGCTCCA 677 387 789 Antisense
GCAATGGCTCCACTTCAAGTATCAT 78 323 802 Antisense
CAAGTATCATTTTTCTTCATGGCAA 145 185 817 Antisense
CATGTCAGCAGGCTTTGGAGGCCCC 640 209 843 Antisense
CTCTTCAACACCACAAACCAATATT 344 229 867 Antisense
ATCCATCTGAACAAATAGCCTCCTC 629 39 1205 Antisense
TGAACAAATAGCCTCCTCATCGGCA 396 573 1212 Antisense
GCAGCAATTATCCGAGCAATGGCTC 605 313 1234 Antisense
Sequence Source Affymetrix Proprietary Database