[Home] | [Total List]

[184968_at]

Description F01G12.1 /REP_DB=WormBase Gene ID /WP=CE04331 /TR=Q19100 /GB=AAA96217.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 12.7
(-2.5)
A 		3.8
(-3)
A 		30
(-1.5)
A 		109.7
(3)
A 		106
B 27.1
(0.7)
M 		36.2
(3)
A 		12.9
(-3)
A 		16.5
(-2.1)
A 		23
C 31.4
(-1.4)
A 		43.9
(0.2)
A 		19
(-3)
A 		65.3
(3)
A 		46
avr 23.7
(-2.6) 		28
(-2) 		20.6
(-3) 		63.8
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 4.2
(-3)
A 		20.6
(-1.2)
A 		59.7
(3)
A 		20.7
(-1.2)
A 		46.5
(1.6)
P 		8.7
(-2.5)
A 		56
B 15.1
(-2.8)
P 		14.4
(-3)
A 		38.5
(2.9)
A 		38.8
(3)
A 		27.3
(0.2)
A 		15.4
(-2.8)
A 		24
C 32.6
(3)
P 		19.7
(0.3)
A 		25
(1.4)
A 		5.7
(-2.5)
A 		31.3
(2.7)
A 		3.5
(-3)
A 		29
avr 17.3
(-1.5) 		18.2
(-1.3) 		41.1
(3) 		21.7
(-0.6) 		35
(1.9) 		9.2
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.6
(-1.5)
A 		0.8
(-3)
A 		7.8
(-0.3)
A 		16.1
(3)
A 		15
B 8.7
(2.8)
M 		8.9
(3)
A 		3
(-3)
A 		3.5
(-2.5)
A 		6
C 10.4
(0.8)
A 		12.6
(3)
A 		6.6
(-3)
A 		11
(1.4)
A 		6
avr 7.9
(-0.1) 		7.4
(-0.8) 		5.8
(-3) 		10.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.8
(-3)
A 		7.3
(-0)
A 		13
(2.5)
A 		5.2
(-1)
A 		14
(3)
P 		2.1
(-2.4)
A 		13
B 5.3
(-2.5)
P 		4.8
(-3)
A 		9.4
(1.4)
A 		10.3
(2.2)
A 		11.1
(3)
A 		5.7
(-2.1)
A 		6
C 12.1
(3)
P 		6
(-0.3)
A 		6.4
(-0.1)
A 		1.1
(-3)
A 		10.1
(1.9)
A 		1.2
(-2.9)
A 		11
avr 6.1
(-0.9) 		6
(-0.9) 		9.6
(1.6) 		5.5
(-1.3) 		11.7
(3) 		3
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184968_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17695
Sequence Type Exemplar sequence
Representative Public ID F01G12.1 NCBI
Target Description F01G12.1 /REP_DB=WormBase Gene ID /WP=CE04331 /TR=Q19100 /GB=AAA96217.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078264(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078264 NCBI Caenorhabditis elegans F01G12.1 (F01G12.1) mRNA, complete cds. 11/11 None
GENEFINDER00000041967 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16394406:16396863:1 9/11 None
F01G12.1 ENSEMBL cdna:known chromosome:CEL140:X:16394990:16396863:1 gene:F01G12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16394989-16396863(+) 82.68 100.0
Public Domain and Genome References
Gene Title
Ensembl F01G12.1
Entrez Gene 184069 Entrez gene
SwissProt Q19100 EMBL-EBI
WormBase CE04331 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6825 copper ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5375 copper ion transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA96217 Hypothetical protein F01G12.1 [Caenorhabditis elegans] ref|NP_510665.1| F01G12.1 [Caenorhabditis elegans] 5.0E-92
blast AAA96217 Hypothetical protein F01G12.1 [Caenorhabditis elegans] ref|NP_510665.1| F01G12.1 [Caenorhabditis elegans] 5.0E-50
blast AAT68894 Hypothetical protein F27C1.2b [Caenorhabditis elegans] ref|NP_001021419.1| F27C1.2b [Caenorhabditis elegans] 3.0E-31
blast CAE66920 Hypothetical protein CBG12308 [Caenorhabditis briggsae] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR007274 EMBL-EBI Ctr copper transporter 2.6E-55
Pfam IPR007274 EMBL-EBI Ctr copper transporter 7.3E-16
Pfam IPR007274 EMBL-EBI Ctr copper transporter 1.8E-9
Pfam IPR007274 EMBL-EBI Ctr copper transporter 1.2E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510665.1 1 142-164
F01G12.1 1 142-164
GENEFINDER00000041967 2 230-252,257-279
Sequence
Target Sequence 
>C. ELEGANS:184968_AT
gtcactttttgacaaccctacaagaaaaacaaatagaaaatgctttatctgaaattgtgg
gcgatcaaccaccccacgatcttaccttaaatcataaggaagagtctctttacgacatgc
ttgttgccagtgttagagcaggtagagagagtcactttgagcttgatcaactggatgtgc
atactgagacaaatcaatctggacacgatcaccacattcataataatgaggagcataaac
atcataatatgaggagtcatgatcatcacaccatgaagatgtggtttcattgggggttcg
atgaagttgtgctttttgatttctggagaattgatgataaaaatgcgctcgcggtaattc
tcggagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACTTTTTGACAACCCTACAAGA 80 461 92 Antisense
AATTGTGGGCGATCAACCACCCCAC 628 177 144 Antisense
ACCCCACGATCTTACCTTAAATCAT 340 89 162 Antisense
GGAAGAGTCTCTTTACGACATGCTT 260 531 189 Antisense
ACGACATGCTTGTTGCCAGTGTTAG 553 91 203 Antisense
GAGAGAGTCACTTTGAGCTTGATCA 413 395 236 Antisense
ATCTGGACACGATCACCACATTCAT 326 35 288 Antisense
GAGGAGTCATGATCATCACACCATG 344 403 342 Antisense
GATGTGGTTTCATTGGGGGTTCGAT 447 407 369 Antisense
GAAGTTGTGCTTTTTGATTTCTGGA 228 337 394 Antisense
ATGCGCTCGCGGTAATTCTCGGAGC 195 41 434 Antisense
Sequence Source Affymetrix Proprietary Database