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[184967_at] G-protein coupled receptor, srv family

Description Y105C5B.6 /REP_DB=WormBase Gene ID /WP=CE24082 /TR=Q9U306 /GB=CAB60322.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 39      6grp_cgc > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 149.9
(3)
P 		72.4
(-3)
A 		87.4
(-1.8)
A 		142.9
(2.5)
M 		78
B 167.3
(3)
P 		106.6
(-0.4)
A 		75
(-2.1)
A 		59.1
(-3)
A 		108
C 173.3
(3)
P 		100.2
(-2.6)
A 		94.3
(-3)
A 		113.6
(-1.5)
P 		79
avr 163.5
(3) 		93.1
(-2.4) 		85.6
(-3) 		105.2
(-1.5) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 108
(3)
A 		102.1
(2.6)
A 		39.5
(-1.4)
A 		39.3
(-1.4)
A 		73.4
(0.8)
A 		15.3
(-3)
A 		93
B 111.9
(3)
P 		99.7
(2.1)
A 		83.8
(0.9)
P 		72.6
(0.1)
A 		107
(2.6)
P 		31.3
(-3)
A 		81
C 58.8
(-0.7)
A 		95.9
(3)
A 		40.1
(-2.6)
A 		36.2
(-3)
A 		63.5
(-0.3)
A 		74.1
(0.8)
A 		60
avr 92.9
(2.4) 		99.2
(3) 		54.5
(-1.5) 		49.4
(-2.1) 		81.3
(1.2) 		40.2
(-3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 54.6
(3)
P 		15.7
(-3)
A 		22.8
(-1.9)
A 		20.9
(-2.2)
M 		39
B 53.3
(3)
P 		26.3
(-1)
A 		17.4
(-2.3)
A 		12.6
(-3)
A 		41
C 57.4
(3)
P 		28.8
(-1.5)
A 		32.9
(-0.8)
A 		19.1
(-3)
P 		38
avr 55.1
(3) 		23.6
(-2) 		24.4
(-1.9) 		17.5
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 19.9
(-0)
A 		36.3
(3)
A 		8.6
(-2.1)
A 		10
(-1.8)
A 		22.1
(0.4)
A 		3.7
(-3)
A 		33
B 38.9
(2.1)
P 		33.2
(1.1)
A 		20.3
(-1.4)
P 		19.2
(-1.6)
A 		43.5
(3)
P 		11.7
(-3)
A 		32
C 21.8
(1)
A 		29.3
(3)
A 		10.2
(-2.2)
A 		7.3
(-3)
A 		20.5
(0.6)
A 		24.8
(1.8)
A 		22
avr 26.9
(1.3) 		32.9
(3) 		13
(-2.8) 		12.2
(-3) 		28.7
(1.8) 		13.4
(-2.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184967_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10049
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.6 NCBI
Target Description Y105C5B.6 /REP_DB=WormBase Gene ID /WP=CE24082 /TR=Q9U306 /GB=CAB60322.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070494(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070494 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-15) (srv-15) mRNA, complete cds. 10/11 None
Y105C5B.6 ENSEMBL cdna:known chromosome:CEL140:IV:15906544:15910053:1 gene:Y105C5B.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15906549-15910059(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srv family
Gene Symbol srv-15
Ensembl Y105C5B.6
Entrez Gene 190889 Entrez gene
SwissProt Q9U306 EMBL-EBI
WormBase CE33204 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60322 Hypothetical protein Y105C5B.6 [Caenorhabditis elegans] ref|NP_502895.2| Serpentine Receptor, class V family member (srv-15) [Caenorhabditis elegans] 0.0
blast CAE68150 Hypothetical protein CBG13802 [Caenorhabditis briggsae] 1.0E-132
blast CAE68149 Hypothetical protein CBG13801 [Caenorhabditis briggsae] 1.0E-128
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502895.2 7 27-49,62-84,104-126,147-169,191-213,248-270,280-302
Y105C5B.6 7 27-49,62-84,104-126,147-169,191-213,248-270,280-302
Sequence
Target Sequence 
>C. ELEGANS:184967_AT
tctgccaggcaatgtgtgtgtctctaatggcgaccaatcgagtatccgcaatattatttc
caaatagacattctaggatttggagctccacacgtctccgaatagccatcgccgtgcaat
ttctaccgggcttgttagccggtctcgcaacatttttcaacgagacccaactctatcgca
acacgaaaaacggattaattccgcggttcaaaagtgagaacttcattgccgtcttatttg
tgattgccggcgggtttttggccactgtgtgtatttatttaataattgcctattgttact
tgatatttatgcttaggaagagtagtaatgcgattgtaattgcaattcaaatttccatac
tatgccttgtcattgtctatgccacgtcactactgaacttcccgcttgacaaattctatc
tattctacaatgctataaggcatgttttcagtgacctctatgccggaatcaacccatacc
ttttatggatcttctcggattctctacggaaacatatctggcatagaatcgggtggcggc
ggacttggaagatacccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGCCAGGCAATGTGTGTGTCTCT 56 611 362 Antisense
TAGGATTTGGAGCTCCACACGTCTC 401 651 435 Antisense
CCATCGCCGTGCAATTTCTACCGGG 420 271 467 Antisense
GCCGGTCTCGCAACATTTTTCAACG 260 283 499 Antisense
TCAACGAGACCCAACTCTATCGCAA 505 631 518 Antisense
GTGAGAACTTCATTGCCGTCTTATT 318 483 575 Antisense
CTATGCCTTGTCATTGTCTATGCCA 283 225 721 Antisense
TGAACTTCCCGCTTGACAAATTCTA 484 573 755 Antisense
TGTTTTCAGTGACCTCTATGCCGGA 430 561 804 Antisense
GATCTTCTCGGATTCTCTACGGAAA 635 419 849 Antisense
GCGGCGGACTTGGAAGATACCCACC 539 293 897 Antisense
Sequence Source Affymetrix Proprietary Database