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[184966_at]

Description F28C10.4 /REP_DB=WormBase Gene ID /WP=CE07157 /TR=Q19859 /GB=AAB00608.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 27.3
(0.7)
A 		7.1
(-3)
A 		7
(-3)
A 		39.8
(3)
A 		33
B 8
(-0.7)
A 		7.9
(-0.8)
A 		4.5
(-3)
A 		13.6
(3)
A 		9
C 7.6
(-1.8)
A 		7.2
(-1.9)
A 		2.9
(-3)
A 		26.2
(3)
A 		23
avr 14.3
(-0.4) 		7.4
(-2.3) 		4.8
(-3) 		26.5
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 6.1
(-2.8)
A 		9.7
(-2.1)
A 		5.1
(-3)
A 		33.2
(2.3)
A 		10.3
(-2)
A 		36.8
(3)
A 		32
B 10.9
(3)
A 		4.8
(-3)
A 		8.4
(0.5)
A 		10.9
(3)
A 		6.6
(-1.2)
A 		7.1
(-0.7)
A 		6
C 4.5
(-1.5)
A 		8.4
(0.9)
A 		11.7
(3)
A 		10.1
(2)
A 		7.2
(0.2)
A 		2.2
(-3)
A 		10
avr 7.2
(-3) 		7.6
(-2.8) 		8.4
(-2.3) 		18.1
(3) 		8
(-2.6) 		15.4
(1.5) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9.9
(3)
A 		1.5
(-3)
A 		1.8
(-2.8)
A 		5.8
(0.1)
A 		8
B 2.5
(1.7)
A 		2
(0.2)
A 		1
(-3)
A 		2.9
(3)
A 		2
C 2.5
(-0.4)
A 		2.1
(-1.1)
A 		1
(-3)
A 		4.4
(3)
A 		3
avr 5
(3) 		1.9
(-2) 		1.3
(-3) 		4.4
(2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.1
(-3)
A 		3.4
(-1.2)
A 		1.1
(-3)
A 		8.4
(2.6)
A 		3.1
(-1.5)
A 		8.9
(3)
A 		8
B 3.8
(3)
A 		1.6
(-3)
A 		2
(-1.9)
A 		2.9
(0.5)
A 		2.7
(0)
A 		2.7
(0)
A 		2
C 1.7
(-0.4)
A 		2.6
(2)
A 		3
(3)
A 		2
(0.4)
A 		2.3
(1.2)
A 		0.7
(-3)
A 		2
avr 2.2
(-2.5) 		2.5
(-1.8) 		2
(-3) 		4.4
(3) 		2.7
(-1.3) 		4.1
(2.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184966_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18066
Sequence Type Exemplar sequence
Representative Public ID F28C10.4 NCBI
Target Description F28C10.4 /REP_DB=WormBase Gene ID /WP=CE07157 /TR=Q19859 /GB=AAB00608.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075714(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075714 NCBI Caenorhabditis elegans F28C10.4 (F28C10.4) mRNA, complete cds. 11/11 None
F28C10.4 ENSEMBL cdna:known chromosome:CEL140:X:537186:540901:-1 gene:F28C10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036543 7/11 Cross Hyb Matching Probes None
SNAP00000036536 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:537185-540901(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28C10.4
Entrez Gene 185052 Entrez gene
SwissProt Q19859 EMBL-EBI
WormBase CE07157 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00608 Hypothetical protein F28C10.4 [Caenorhabditis elegans] ref|NP_508115.1| F28C10.4 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184966_AT
gaatgatcactacaatctggtcttggcgccatcttttgaaaatttaccagattttctcaa
ttttaaatcaattgaccgcattctttaccgcacttcgaaaaatatgagcatcaatcaaat
tgatgaatttttgactcaaacctggaaactgatgaataaatgcacttctggttgtatctt
cctattcattttcccaatttataaatgtctcaaggatatgttcacaatcgcctttggcgg
aaaacgttccaagttcaaggttagtaaaacggtgactaataagaaaagtcaattggattt
tggacatgacatcttcagattctgctcgccacaacctacaccacacttcaaggtcagaag
caagttttcaaaattctggtcaaataggacaaggggacttttctcgatttataaatcttt
aacttcacatttgctcgttttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGATCACTACAATCTGGTCTTG 612 331 684 Antisense
GTCTTGGCGCCATCTTTTGAAAATT 507 449 703 Antisense
AATCAATTGACCGCATTCTTTACCG 98 171 749 Antisense
CATTCTTTACCGCACTTCGAAAAAT 629 213 762 Antisense
AATGCACTTCTGGTTGTATCTTCCT 457 165 842 Antisense
TGGTTGTATCTTCCTATTCATTTTC 367 551 852 Antisense
GGATATGTTCACAATCGCCTTTGGC 180 509 897 Antisense
TGACATCTTCAGATTCTGCTCGCCA 332 571 990 Antisense
ACAACCTACACCACACTTCAAGGTC 196 111 1014 Antisense
GACAAGGGGACTTTTCTCGATTTAT 664 359 1071 Antisense
TTAACTTCACATTTGCTCGTTTTCA 393 683 1102 Antisense
Sequence Source Affymetrix Proprietary Database