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[184965_s_at]

Description F32E10.6 /REP_DB=WormBase Gene ID /WP=CE04479 /TR=Q19973 /GB=AAA83358.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 56      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 87      6grp_total > 47      4grp_total > 53      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1145
1 2 3 4 range
A 1384.9
(3)
P 		1002.3
(0.6)
P 		1005.3
(0.6)
P 		437.1
(-3)
P 		948
B 1582.3
(3)
P 		1137.8
(0.5)
P 		1040.8
(-0.1)
P 		522.3
(-3)
P 		1060
C 1505.3
(3)
P 		1018
(0.1)
P 		1105
(0.6)
P 		512.7
(-3)
P 		993
avr 1490.8
(3) 		1052.7
(0.4) 		1050.4
(0.4) 		490.7
(-3) 		1000

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 651
1 2 3 4 5 6 range
A 1157.8
(0.9)
P 		1192.3
(1.4)
P 		1090.5
(0)
P 		1211.7
(1.6)
P 		865.2
(-3)
P 		1314.2
(3)
P 		449
B 1353.6
(1.2)
P 		1221.6
(-0.5)
P 		1102.2
(-1.9)
P 		1017
(-3)
P 		1188.6
(-0.9)
P 		1499.2
(3)
P 		482
C 1340.2
(1.2)
P 		1377.3
(1.6)
P 		1120.7
(-1)
P 		1011
(-2.1)
P 		924.6
(-3)
P 		1515.8
(3)
P 		591
avr 1283.9
(0.9) 		1263.7
(0.6) 		1104.5
(-1.5) 		1079.9
(-1.8) 		992.8
(-3) 		1443.1
(3) 		450
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 441
1 2 3 4 range
A 504.2
(3)
P 		217.6
(-0.9)
P 		262.8
(-0.3)
P 		64
(-3)
P 		440
B 504.6
(3)
P 		281
(-0.4)
P 		241.2
(-1)
P 		111.3
(-3)
P 		393
C 498.3
(3)
P 		292.7
(0)
P 		385.1
(1.4)
P 		86.4
(-3)
P 		412
avr 502.4
(3) 		263.8
(-0.4) 		296.4
(0) 		87.2
(-3) 		415

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 213.4
(-3)
P 		424.1
(3)
P 		237.5
(-2.3)
P 		307.3
(-0.3)
P 		261.1
(-1.6)
P 		320
(0)
P 		211
B 471
(1.2)
P 		406.6
(-0.1)
P 		267.7
(-3)
P 		269.4
(-3)
P 		482.9
(1.4)
P 		559.1
(3)
P 		291
C 496.7
(2.8)
P 		420.3
(1.3)
P 		285.2
(-1.4)
P 		203.3
(-3)
P 		299.2
(-1.1)
P 		507.4
(3)
P 		304
avr 393.7
(1) 		417
(1.7) 		263.5
(-2.9) 		260
(-3) 		347.7
(-0.4) 		462.2
(3) 		202
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184965_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9053
Sequence Type Exemplar sequence
Representative Public ID F32E10.6 NCBI
Target Description F32E10.6 /REP_DB=WormBase Gene ID /WP=CE04479 /TR=Q19973 /GB=AAA83358.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068831(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068831 NCBI Caenorhabditis elegans F32E10.6 (F32E10.6) mRNA, complete cds. 11/11 None
SNAP00000038468 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7578733:7580088:-1 11/11 None
GENEFINDER00000038479 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7578733:7580088:-1 11/11 None
F32E10.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:7578492:7580098:-1 gene:F32E10.6 11/11 None
F32E10.6.2 ENSEMBL cdna:known chromosome:CEL140:IV:7578493:7580096:-1 gene:F32E10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7578738-7580094(-) 90.58 100.0
Public Domain and Genome References
Gene Title
Ensembl F32E10.6
Entrez Gene 177537 Entrez gene
SwissProt Q19973 EMBL-EBI
WormBase CE04479 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6333 chromatin assembly or disassembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
785 chromatin inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3682 chromatin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83358 Hypothetical protein F32E10.6 [Caenorhabditis elegans] ref|NP_501232.1| F32E10.6 [Caenorhabditis elegans] 6.0E-71
blast CAE61921 Hypothetical protein CBG05917 [Caenorhabditis briggsae] 4.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR000953 EMBL-EBI Chromo 4.7E-6
Sequence
Target Sequence 
>C. ELEGANS:184965_S_AT
ttctcatgacatgaaaccaccaccggtcaagaagtctaacaagaagaagggaagcaagaa
atcgccgaaaaagtccgctaaatcgaaggatgatgactcttccgacgaagaggaagaaga
ggaagtcaaagagaaatctccaaagaaatcctcgaaatccacaaagagagctgcttctga
tgatgatgaagaagaggagcctgttgctacaaagaagtcgaagaaatcgaagcgtgctga
gactcctgaggaagaagacgacgaagaagaagaggttgttaagactccgaagaagacgaa
gaaatcgaagcgtgctgagactcctgaggaagaagacgaagtagaagaagaggttgttaa
gactccaaaaaagtcgaagtcttcgaagagtccaaagaagtcgaaacgcgctgaaacctc
cgacgaggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCATGACATGAAACCACCACCG 333 689 513 Antisense
CCACCACCGGTCAAGAAGTCTAACA 430 273 529 Antisense
ATCGCCGAAAAAGTCCGCTAAATCG 157 37 573 Antisense
AAGGATGATGACTCTTCCGACGAAG 90 161 598 Antisense
AAGAAATCCTCGAAATCCACAAAGA 82 153 655 Antisense
AAGAGAGCTGCTTCTGATGATGATG 561 153 676 Antisense
GGAGCCTGTTGCTACAAAGAAGTCG 51 523 708 Antisense
ATCGAAGCGTGCTGAGACTCCTGAG 170 35 738 Antisense
TCGAAGCGTGCTGAGACTCCTGAGG 485 601 817 Antisense
AGAAGTCGAAACGCGCTGAAACCTC 288 69 908 Antisense
CGCGCTGAAACCTCCGACGAGGAAG 615 255 919 Antisense
Sequence Source Affymetrix Proprietary Database