[Home] | [Total List]

[184963_at]

Description Y67A10A.1 /REP_DB=WormBase Gene ID /WP=CE24563 /TR=Q9U1V4 /GB=CAB60446.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 11.6
(-3)
A 		21.6
(-2.1)
A 		23.5
(-1.9)
A 		77.9
(3)
A 		66
B 56.6
(3)
A 		12.4
(-3)
A 		27.8
(-0.9)
A 		56.9
(3)
A 		45
C 56.5
(-0.9)
A 		69.4
(0.1)
A 		30.7
(-3)
A 		104.8
(3)
A 		74
avr 41.6
(-1.4) 		34.5
(-2.2) 		27.3
(-3) 		79.9
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 646
1 2 3 4 5 6 range
A 60.6
(-2.6)
A 		88.6
(-2.3)
A 		82.2
(-2.4)
A 		611.7
(3)
P 		485.2
(1.7)
P 		19.1
(-3)
A 		593
B 34.8
(-3)
A 		90.2
(-2.3)
P 		94.3
(-2.2)
A 		503.2
(3)
P 		383.4
(1.5)
P 		63.1
(-2.6)
P 		468
C 38.7
(-2.7)
A 		107.8
(-2.1)
P 		11.6
(-3)
A 		657.9
(3)
P 		351.6
(0.2)
P 		45.9
(-2.7)
A 		646
avr 44.7
(-3) 		95.5
(-2.4) 		62.7
(-2.8) 		590.9
(3) 		406.7
(1) 		42.7
(-3) 		548
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4.2
(-3)
A 		4.7
(-2.6)
A 		6.1
(-1.4)
A 		11.4
(3)
A 		7
B 18
(3)
A 		3.1
(-3)
A 		6.4
(-1.7)
A 		12.1
(0.6)
A 		15
C 18.7
(2.2)
A 		19.9
(3)
A 		10.7
(-3)
A 		17.7
(1.6)
A 		9
avr 13.6
(2.9) 		9.2
(-1.5) 		7.7
(-3) 		13.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 11.2
(-2.7)
A 		31.5
(-1.9)
A 		17.9
(-2.5)
A 		155.1
(3)
P 		146.4
(2.7)
P 		4.6
(-3)
A 		151
B 12.1
(-3)
A 		30
(-2.3)
P 		22.9
(-2.5)
A 		133.3
(2.1)
P 		155.8
(3)
P 		23.5
(-2.5)
P 		144
C 14.3
(-2.5)
A 		32.9
(-1.6)
P 		3
(-3)
A 		132.3
(3)
P 		113.8
(2.1)
P 		15.3
(-2.4)
A 		129
avr 12.5
(-3) 		31.5
(-2.1) 		14.6
(-2.9) 		140.2
(3) 		138.7
(2.9) 		14.5
(-2.9) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184963_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10047
Sequence Type Exemplar sequence
Representative Public ID Y67A10A.1 NCBI
Target Description Y67A10A.1 /REP_DB=WormBase Gene ID /WP=CE24563 /TR=Q9U1V4 /GB=CAB60446.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070341(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070341 NCBI Caenorhabditis elegans Y67A10A.1 (Y67A10A.1) mRNA, complete cds. 11/11 None
SNAP00000008011 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14345402:14350697:-1 10/11 None
GENEFINDER00000008023 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14344667:14350697:-1 9/11 None
Y67A10A.1 ENSEMBL cdna:known chromosome:CEL140:IV:14345402:14350697:-1 gene:Y67A10A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14345407-14350703(-) 99.64 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67A10A.1
Entrez Gene 190505 Entrez gene
SwissProt Q9U1V4 EMBL-EBI
WormBase CE24563 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60446 Hypothetical protein Y67A10A.1 [Caenorhabditis elegans] ref|NP_502742.1| Y67A10A.1 [Caenorhabditis elegans] 0.0
blast CAE72073 Hypothetical protein CBG19159 [Caenorhabditis briggsae] 0.0
blast NP_505334 R03H4.5 [Caenorhabditis elegans] gb|AAC48106.1| Hypothetical protein R03H4.5 [Caenorhabditis elegans] 0.0
blast CAB60446 Hypothetical protein Y67A10A.1 [Caenorhabditis elegans] ref|NP_502742.1| Y67A10A.1 [Caenorhabditis elegans] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 5.2E-15
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 6.0E-14
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 3.4E-36
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 2.2E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502742.1 10 7-26,30-49,70-89,135-157,164-184,188-210,255-272,287-309,314-333,343-362
Y67A10A.1 10 7-26,30-49,70-89,135-157,164-184,188-210,255-272,287-309,314-333,343-362
SNAP00000008011 5 10-32,39-58,89-111,181-198,213-235
GENEFINDER00000008023 9 10-32,39-58,104-126,133-153,157-179,224-241,256-278,283-302,312-331
Sequence
Target Sequence 
>C. ELEGANS:184963_AT
gcacatccgagctcattttaactacaactattcagattatcgatatatgtcagttattgc
cagttacgggcttttttcggaccaccgtttgctttctcagcaggctttggaattttcaaa
gaaacaagtggaattgcacaagcccgacgtgcttttcatagtggcaagatatatgaataa
cataaaaaatcctgttcaaaaggatgataagattgtgcaacaaattaatgaaacaattgc
acattatgaaaaatacgtgaaaaaactatacatcctggacgcattcccagagtttcatga
aaactttttgaacttattcctgcactacgctgtaactaggccagatgacatggatgctct
gcatttgagtaaaaagttggcggacgacgaaaagagaccggtggtgaagagattcaggca
gataaaatgcaagaaatgccacttcttcgatctcagtcccatgttcctggaagatgacaa
gtacctgacattcgataaagacacaatgttggcttacgtggataattccgtacatctcac
aggccctggggtgaaagtctgtgagcctgtcttcaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACATCCGAGCTCATTTTAACTAC 85 317 1338 Antisense
GTTTGCTTTCTCAGCAGGCTTTGGA 46 451 1424 Antisense
TTGCACAAGCCCGACGTGCTTTTCA 502 703 1471 Antisense
AACTATACATCCTGGACGCATTCCC 142 139 1601 Antisense
GACGCATTCCCAGAGTTTCATGAAA 361 381 1615 Antisense
TTATTCCTGCACTACGCTGTAACTA 446 677 1651 Antisense
AAGAAATGCCACTTCTTCGATCTCA 355 153 1768 Antisense
ATCTCAGTCCCATGTTCCTGGAAGA 264 33 1787 Antisense
GGATAATTCCGTACATCTCACAGGC 315 509 1857 Antisense
GGCCCTGGGGTGAAAGTCTGTGAGC 12 543 1879 Antisense
AAGTCTGTGAGCCTGTCTTCAAGAA 410 157 1892 Antisense
Sequence Source Affymetrix Proprietary Database