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[184961_s_at]

Description C17C3.10 /REP_DB=WormBase Gene ID /WP=CE04030 /TR=Q18056 /GB=AAK31423.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 32      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 39.9
(-1)
A 		14.9
(-3)
A 		89.3
(3)
A 		88
(2.9)
A 		74
B 31.5
(-0.7)
A 		7
(-3)
A 		72
(3)
A 		34.1
(-0.5)
A 		65
C 4.7
(-3)
A 		70.5
(2.5)
A 		52.1
(1)
A 		76.4
(3)
A 		72
avr 25.4
(-3) 		30.8
(-2.3) 		71.1
(3) 		66.2
(2.4) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 64.8
(3)
A 		8.4
(-3)
A 		23.1
(-1.4)
A 		45.2
(0.9)
A 		31.3
(-0.6)
A 		18.1
(-2)
A 		56
B 39.9
(1.9)
A 		44.7
(2.8)
A 		46
(3)
A 		11.9
(-3)
A 		40.1
(2)
A 		41.2
(2.2)
A 		34
C 27.5
(-1.1)
A 		65
(3)
A 		26.3
(-1.2)
A 		9.5
(-3)
A 		22.8
(-1.6)
A 		58.6
(2.3)
A 		56
avr 44.1
(3) 		39.4
(1.7) 		31.8
(-0.4) 		22.2
(-3) 		31.4
(-0.5) 		39.3
(1.7) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 14.5
(0.4)
A 		3.2
(-3)
A 		23.3
(3)
A 		12.9
(-0.1)
A 		20
B 10
(0.3)
A 		1.7
(-3)
A 		16.7
(3)
A 		7.3
(-0.8)
A 		15
C 1.6
(-3)
A 		20.3
(3)
A 		18.1
(2.3)
A 		12.9
(0.6)
A 		19
avr 8.7
(-2.8) 		8.4
(-3) 		19.4
(3) 		11
(-1.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 12
(3)
A 		3
(-3)
A 		5
(-1.7)
A 		11.5
(2.7)
A 		9.4
(1.3)
A 		4.4
(-2.1)
A 		9
B 13.9
(1.9)
A 		14.9
(2.4)
A 		11.2
(0.7)
A 		3.2
(-3)
A 		16.3
(3)
A 		15.4
(2.6)
A 		13
C 10.2
(-0.2)
A 		19.8
(3)
A 		6.7
(-1.4)
A 		1.9
(-3)
A 		7.4
(-1.2)
A 		19.6
(2.9)
A 		18
avr 12
(2.1) 		12.6
(2.6) 		7.6
(-1.3) 		5.5
(-3) 		11
(1.3) 		13.1
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184961_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4577
Sequence Type Exemplar sequence
Representative Public ID C17C3.10 NCBI
Target Description C17C3.10 /REP_DB=WormBase Gene ID /WP=CE04030 /TR=Q18056 /GB=AAK31423.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062662(11), NM_062664(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062662 NCBI Caenorhabditis elegans Helix Loop Helix family member (hlh-25) (hlh-25) mRNA, complete cds. 11/11 None
NM_062664 NCBI Caenorhabditis elegans Helix Loop Helix family member (hlh-27) (hlh-27) mRNA, complete cds. 11/11 None
SNAP00000005284 ENSEMBL cdna:SNAP chromosome:CEL140:II:5535210:5536119:1 11/11 None
SNAP00000005287 ENSEMBL cdna:SNAP chromosome:CEL140:II:5539270:5540179:-1 11/11 None
GENEFINDER00000005304 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5539270:5541786:-1 11/11 None
GENEFINDER00000005309 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5535210:5536119:1 11/11 None
C17C3.7 ENSEMBL cdna:known chromosome:CEL140:II:5534676:5536119:1 gene:C17C3.7 11/11 None
C17C3.10 ENSEMBL cdna:known chromosome:CEL140:II:5539270:5541786:-1 gene:C17C3.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5535205-5536117(+) 82.92 82.92
chrII:5539267-5541784(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol hlh-27
hlh-25
Ensembl C17C3.7
C17C3.10
Entrez Gene 182717 Entrez gene
182719 Entrez gene
SwissProt Q18056 EMBL-EBI
Q18054 EMBL-EBI
WormBase CE04030 Wormbase
CE04027 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31423 Helix loop helix protein 27 [Caenorhabditis elegans] ref|NP_495065.1| Helix Loop Helix family member (hlh-27) [Caenorhabditis elegans] 1.0E-169
blast AAK31421 Helix loop helix protein 25 [Caenorhabditis elegans] ref|NP_495063.1| Helix Loop Helix family member (hlh-25) [Caenorhabditis elegans] 1.0E-168
blast AAK31423 Helix loop helix protein 27 [Caenorhabditis elegans] ref|NP_495065.1| Helix Loop Helix family member (hlh-27) [Caenorhabditis elegans] 1.0E-160
blast AAK31421 Helix loop helix protein 25 [Caenorhabditis elegans] ref|NP_495063.1| Helix Loop Helix family member (hlh-25) [Caenorhabditis elegans] 1.0E-152
blast AAK31423 Helix loop helix protein 27 [Caenorhabditis elegans] ref|NP_495065.1| Helix Loop Helix family member (hlh-27) [Caenorhabditis elegans] 1.0E-140
blast AAK31423 Helix loop helix protein 27 [Caenorhabditis elegans] ref|NP_495065.1| Helix Loop Helix family member (hlh-27) [Caenorhabditis elegans] 1.0E-139
blast AAK31421 Helix loop helix protein 25 [Caenorhabditis elegans] ref|NP_495063.1| Helix Loop Helix family member (hlh-25) [Caenorhabditis elegans] 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 1.6E-10
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 1.6E-10
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 1.6E-10
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 1.6E-10
Sequence
Target Sequence 
>C. ELEGANS:184961_S_AT
atcgaatgacctctccgaatctacaagacggaagtttgatactgaatccgaaagaagaaa
agtgaagactgaacgtgaaaagattcgaagaaagaaacaagatgactgttatgctgaatt
gaaattcttcattttgaacaaacaaatgggaagttacgagcaacgattaaaacttgaacg
gatcacaattctagaaatcatcattgattacattaaacacaattccgatcttctgtatcc
agaaacaattccccaaatacttcctcttttagctggaaaatcaactgctacttgtgagaa
caaagagaatgaaaagccaaaaacacgaatggaagtgaaggatctcttcccaagattgac
gtttcaagaagttcaagaatccccaacatctacttctccattgctcacatttccatgtat
tccaatgatcccaactactcagttcaatgtcttgtcaaactacaacaccgttccatcaat
attttctgctcccctccgattcattcttccatcacttcaaatcttaacacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGAATGACCTCTCCGAATCTACA 410 37 396 Antisense
ACACAATTCCGATCTTCTGTATCCA 659 109 612 Antisense
CCAAATACTTCCTCTTTTAGCTGGA 46 111 648 Antisense
GGATCTCTTCCCAAGATTGACGTTT 411 511 735 Antisense
TCAAGAATCCCCAACATCTACTTCT 6 633 768 Antisense
CTCCATTGCTCACATTTCCATGTAT 700 235 791 Antisense
GTATTCCAATGATCCCAACTACTCA 36 451 812 Antisense
CAACTACTCAGTTCAATGTCTTGTC 593 187 827 Antisense
TGTCAAACTACAACACCGTTCCATC 332 553 848 Antisense
CGTTCCATCAATATTTTCTGCTCCC 464 247 864 Antisense
TCCATCACTTCAAATCTTAACACCA 83 591 903 Antisense
Sequence Source Affymetrix Proprietary Database